HL_9RHU_014

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_014 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.0606

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RHU|1|A1|C|619
9RHU|1|A1|A|620
9RHU|1|A1|G|621
9RHU|1|A1|C|622
9RHU|1|A1|C|623
9RHU|1|A1|G|624

Current chains

Chain A1

18S rRNA

Nearby chains

Chain I1

mRNA containing F2A sequence

Chain i1

40S ribosomal protein S23