9RHU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9RHU_001 | 1/A1/7:17 | No text annotation | homologous HL_9H3G_079 HL_73535.4 | |
| HL_9RHU_002 | 1/A1/69:80 | No text annotation | ||
| HL_9RHU_003 | 1/A1/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_9RHU_005 | 1/A1/289:296 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_9RHU_006 | 1/A1/323:330 | No text annotation | ||
| HL_9RHU_007 | 1/A1/378:388 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_9RHU_008 | 1/A1/417:422 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_9RHU_009 | 1/A1/442:453 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9RHU_010 | 1/A1/463:468 | No text annotation | homologous HL_9PN5_087 HL_61337.7 | |
| HL_9RHU_011 | 1/A1/499:505 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_9RHU_013 | 1/A1/570:582 | No text annotation | homologous HL_9PN5_090 HL_68749.4 | |
| HL_9RHU_014 | 1/A1/619:624 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9RHU_015 | 1/A1/821:829 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_9RHU_018 | 1/A1/958:967 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_9RHU_019 | 1/A1/995:1000 | No text annotation | homologous HL_9H3G_094 HL_34789.7 | |
| HL_9RHU_020 | 1/A1/1055:1065 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9RHU_021 | 1/A1/1115:1120 | No text annotation | ||
| HL_9RHU_022 | 1/A1/1142:1147 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_9RHU_023 | 1/A1/1179:1184 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9RHU_024 | 1/A1/1246:1255 | No text annotation | homologous HL_9H3G_099 HL_97521.4 | |
| HL_9RHU_025 | 1/A1/1296:1305 | No text annotation | homologous HL_9H3G_100 HL_98423.6 | |
| HL_9RHU_026 | 1/A1/1354:1359 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9RHU_027 | 1/A1/1367:1374 | No text annotation | homologous HL_9H3G_102 HL_63894.5 | |
| HL_9RHU_028 | 1/A1/1418:1423 | No text annotation | ||
| HL_9RHU_029 | 1/A1/1461:1467 | No text annotation | geometric HL_8GLP_113 HL_76371.5 | |
| HL_9RHU_030 | 1/A1/1566:1571 | No text annotation | homologous HL_9H3G_105 HL_34789.7 | |
| HL_9RHU_031 | 1/A1/1615:1626 | No text annotation | homologous HL_9PN5_108 HL_50951.4 | |
| HL_9RHU_032 | 1/A1/1659:1667 | No text annotation | homologous HL_9H3G_107 HL_25307.3 | |
| HL_9RHU_034 | 1/A1/1848:1853 | No text annotation | homologous HL_9H3G_108 HL_34789.7 | |
| HL_9RHU_035 | 1/A3/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9RHU_036 | 1/A3/68:73 | No text annotation | homologous HL_8GLP_002 HL_23875.2 | |
| HL_9RHU_037 | 1/A3/89:95 | No text annotation | homologous HL_8GLP_003 HL_76371.5 | |
| HL_9RHU_038 | 1/A3/131:137 | No text annotation | geometric HL_6DTD_001 HL_89167.5 | |
| HL_9RHU_039 | 1/A3/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.6 | |
| HL_9RHU_040 | 1/A3/222:226 | No text annotation | geometric HL_8GLP_006 HL_75660.11 | |
| HL_9RHU_041 | 1/A3/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.7 | |
| HL_9RHU_042 | 1/A3/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.5 | |
| HL_9RHU_043 | 1/A3/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.5 | |
| HL_9RHU_044 | 1/A3/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.7 | |
| HL_9RHU_045 | 1/A3/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_9RHU_047 | 1/A3/862:870 | No text annotation | geometric HL_12CJ_003 HL_59138.3 | |
| HL_9RHU_048 | 1/A3/1069:1074 | No text annotation | ||
| HL_9RHU_049 | 1/A3/1261:1270 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9RHU_050 | 1/A3/1308:1317 | No text annotation | ||
| HL_9RHU_051 | 1/A3/1333:1338 | No text annotation | homologous HL_8GLP_018 HL_34789.7 | |
| HL_9RHU_052 | 1/A3/1392:1403 | No text annotation | ||
| HL_9RHU_053 | 1/A3/1435:1439 | No text annotation | homologous HL_8GLP_021 HL_12111.1 | |
| HL_9RHU_054 | 1/A3/1516:1521 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9RHU_055 | 1/A3/1548:1557 | No text annotation | homologous HL_8GLP_023 HL_50204.4 | |
| HL_9RHU_056 | 1/A3/1582:1590 | No text annotation | homologous HL_8GLP_024 HL_28253.2 | |
| HL_9RHU_057 | 1/A3/1630:1635 | No text annotation | homologous HL_9H3G_028 HL_27530.4 | |
| HL_9RHU_059 | 1/A3/1755:1762 | No text annotation | homologous HL_8GLP_027 HL_63894.5 | |
| HL_9RHU_060 | 1/A3/1803:1809 | No text annotation | homologous HL_8GLP_028 HL_34789.7 | |
| HL_9RHU_061 | 1/A3/1825:1832 | No text annotation | homologous HL_8GLP_029 HL_47171.4 | |
| HL_9RHU_062 | 1/A3/1917:1927 | No text annotation | homologous HL_9AXU_025 NA | |
| HL_9RHU_063 | 1/A3/1945:1952 | No text annotation | homologous HL_9AXU_026 NA | |
| HL_9RHU_064 | 1/A3/2100:2104 | No text annotation | ||
| HL_9RHU_065 | 1/A3/2160:2165 | No text annotation | homologous HL_8GLP_032 HL_34789.7 | |
| HL_9RHU_066 | 1/A3/2219:2227 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.8 | |
| HL_9RHU_067 | 1/A3/2263:2269 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_9RHU_068 | 1/A3/2301:2306 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_9RHU_069 | 1/A3/2312:2314 | No text annotation | ||
| HL_9RHU_071 | 1/A3/2366:2375 | No text annotation | homologous HL_8GLP_038 HL_77449.4 | |
| HL_9RHU_073 | 1/A3/2421:2426 | No text annotation | homologous HL_8GLP_040 HL_34789.7 | |
| HL_9RHU_074 | 1/A3/2467:2475 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9RHU_075 | 1/A3/2507:2513 | No text annotation | homologous HL_8GLP_042 HL_52776.1 | |
| HL_9RHU_076 | 1/A3/2548:2553 | No text annotation | ||
| HL_9RHU_077 | 1/A3/2581:2585 | No text annotation | homologous HL_8GLP_044 HL_90436.6 | |
| HL_9RHU_078 | 1/A3/2635:2642 | No text annotation | homologous HL_8GLP_045 HL_28592.5 | |
| HL_9RHU_079 | 1/A3/2653:2659 | No text annotation | homologous HL_8GLP_046 HL_34789.7 | |
| HL_9RHU_080 | 1/A3/2715:2720 | No text annotation | homologous HL_9AXU_040 HL_61337.7 | |
| HL_9RHU_081 | 1/A3/3346:3350 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_9RHU_082 | 1/A3/3371:3381 | No text annotation | homologous HL_9H3G_049 HL_87681.4 | |
| HL_9RHU_083 | 1/A3/3400:3406 | No text annotation | homologous HL_8GLP_051 HL_34789.7 | |
| HL_9RHU_084 | 1/A3/3456:3461 | No text annotation | homologous HL_9PN5_046 HL_34789.7 | |
| HL_9RHU_085 | 1/A3/3489:3499 | No text annotation | homologous HL_9H3G_052 HL_82185.4 | |
| HL_9RHU_086 | 1/A3/3528:3536 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_9RHU_087 | 1/A3/3605:3614 | No text annotation | homologous HL_8GLP_055 HL_78372.4 | |
| HL_9RHU_089 | 1/A3/3939:3947 | LSU P loop | homologous HL_8GLP_059 HL_11974.5 | |
| HL_9RHU_090 | 1/A3/3956:3968 | No text annotation | homologous HL_8GLP_060 HL_02042.4 | |
| HL_9RHU_091 | 1/A3/3996:4004 | No text annotation | homologous HL_8GLP_061 HL_02452.4 | |
| HL_9RHU_092 | 1/A3/4016:4023 | No text annotation | homologous HL_8GLP_062 HL_52651.5 | |
| HL_9RHU_093 | 1/A3/4047:4055 | No text annotation | homologous HL_8GLP_063 HL_15296.4 | |
| HL_9RHU_094 | 1/A3/4067:4072 | No text annotation | homologous HL_8GLP_064 HL_34789.7 | |
| HL_9RHU_095 | 1/A3/4098:4108 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9RHU_096 | 1/A3/4163:4171 | No text annotation | homologous HL_9H3G_062 HL_52011.4 | |
| HL_9RHU_097 | 1/A3/4220:4227 | No text annotation | homologous HL_8GLP_067 HL_02262.2 | |
| HL_9RHU_098 | 1/A3/4243:4249 | No text annotation | homologous HL_9PN5_061 HL_02262.2 | |
| HL_9RHU_099 | 1/A3/4286:4291 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_9RHU_100 | 1/A3/4349:4354 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9RHU_101 | 1/A3/4392:4397 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_9RHU_102 | 1/A3/4434:4448 | No text annotation | homologous HL_9H3G_068 HL_53269.5 | |
| HL_9RHU_103 | 1/A3/4645:4654 | No text annotation | homologous HL_8GLP_074 HL_31089.4 | |
| HL_9RHU_104 | 1/A3/4714:4722 | No text annotation | homologous HL_8GLP_075 HL_37889.4 | |
| HL_9RHU_105 | 1/A3/4760:4767 | No text annotation | ||
| HL_9RHU_106 | 1/B3/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.3 | |
| HL_9RHU_107 | 1/B3/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.5 | |
| HL_9RHU_108 | 1/B3/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9RHU_109 | 1/C3/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.4 | |
| HL_9RHU_110 | 1/C3/68:90 | No text annotation | homologous HL_8GLP_079 NA | |
| HL_9RHU_111 | 1/C3/107:112 | No text annotation | homologous HL_8GLP_080 HL_23875.2 | |
| HL_9RHU_112 | 1/C3/122:128 | No text annotation | ||
| HL_9RHU_115 | 1/J1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_33597.8 | |
| HL_9RHU_116 | 1/K1/12:23 | No text annotation | homologous HL_4QEI_001 HL_76195.2 | |
| HL_9RHU_117 | 1/K1/31:39 | tRNA anticodon loop | homologous HL_9MTS_102 HL_81376.5 | |
| HL_9RHU_118 | 1/K1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WWT_002 HL_33597.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9RHU_004 | GNRA | ||
| HL_9RHU_012 | No text annotation | ||
| HL_9RHU_016 | No text annotation | ||
| HL_9RHU_017 | No text annotation | ||
| HL_9RHU_033 | No text annotation | ||
| HL_9RHU_046 | UNCG | ||
| HL_9RHU_058 | No text annotation | ||
| HL_9RHU_070 | No text annotation | ||
| HL_9RHU_072 | No text annotation | ||
| HL_9RHU_088 | No text annotation | ||
| HL_9RHU_113 | tRNA D-loop | ||
| HL_9RHU_114 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9RHU_001 | 1/A1/23:25, 1/A1/650:652 | Isolated non-canonical cWW pair | geometric IL_9H3G_007 IL_01003.7 | |
| IL_9RHU_002 | 1/A1/34:36, 1/A1/520:522 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.7 | |
| IL_9RHU_003 | 1/A1/37:40, 1/A1/515:519 | Double sheared | geometric IL_8GLP_190 IL_58355.5 | |
| IL_9RHU_004 | 1/A1/41:47, 1/A1/480:482 | No text annotation | geometric IL_8GLP_191 IL_88082.5 | |
| IL_9RHU_005 | 1/A1/49:51, 1/A1/477:478 | Minor groove platform | homologous IL_9H3G_159 IL_26092.1 | |
| IL_9RHU_006 | 1/A1/57:62, 1/A1/86:88 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_9RHU_007 | 1/A1/63:68, 1/A1/81:85 | No text annotation | homologous IL_9PN5_148 IL_21667.4 | |
| IL_9RHU_008 | 1/A1/108:112, 1/A1/350:354 | No text annotation | geometric IL_9JA9_001 IL_71154.6 | |
| IL_9RHU_009 | 1/A1/112:115, 1/A1/349:350 | No text annotation | homologous IL_9H3G_163 IL_71421.6 | |
| IL_9RHU_010 | 1/A1/116:121, 1/A1/344:348 | No text annotation | homologous IL_9PN5_151 IL_31545.4 | |
| IL_9RHU_011 | 1/A1/145:151, 1/A1/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9RHU_012 | 1/A1/152:154, 1/A1/164:166 | Isolated cWH basepair | homologous IL_9PN5_153 IL_10892.5 | |
| IL_9RHU_013 | 1/A1/188:192, 1/A1/207:211 | No text annotation | geometric IL_8GLP_204 IL_87767.5 | |
| IL_9RHU_014 | 1/A1/216:219, 1/A1/303:310 | No text annotation | ||
| IL_9RHU_016 | 1/A1/313:315, 1/A1/337:338 | Single bulged A | homologous IL_9H3G_171 IL_14190.5 | |
| IL_9RHU_017 | 1/A1/318:320, 1/A1/333:334 | Single stack bend | geometric IL_9PN5_136 IL_15011.6 | |
| IL_9RHU_018 | 1/A1/360:365, 1/A1/397:404 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9RHU_019 | 1/A1/367:372, 1/A1/394:395 | No text annotation | homologous IL_9PN5_160 IL_01372.4 | |
| IL_9RHU_020 | 1/A1/412:414, 1/A1/425:430 | No text annotation | homologous IL_9H3G_175 IL_93336.4 | |
| IL_9RHU_021 | 1/A1/438:440, 1/A1/455:457 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9RHU_022 | 1/A1/460:462, 1/A1/469:471 | Isolated non-canonical cWW pair | homologous IL_9H3G_177 IL_19025.1 | |
| IL_9RHU_023 | 1/A1/488:490, 1/A1/512:513 | Single bulged U | homologous IL_9H3G_178 IL_97561.8 | |
| IL_9RHU_024 | 1/A1/492:496, 1/A1/509:510 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9RHU_025 | 1/A1/496:497, 1/A1/507:509 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9RHU_026 | 1/A1/530:531, 1/A1/555:557 | Single bulged A | homologous IL_9H3G_181 IL_14190.5 | |
| IL_9RHU_028 | 1/A1/564:566, 1/A1/586:593 | No text annotation | homologous IL_9H3G_182 IL_02511.3 | |
| IL_9RHU_029 | 1/A1/567:570, 1/A1/582:585 | Tandem non-canonical cWW pairs | geometric IL_8GLP_220 IL_71194.5 | |
| IL_9RHU_030 | 1/A1/600:607, 1/A1/637:638 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9RHU_031 | 1/A1/607:609, 1/A1/636:637 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_9RHU_032 | 1/A1/612:618, 1/A1/625:633 | Kink-turn related | homologous IL_9H3G_187 IL_52042.4 | |
| IL_9RHU_033 | 1/A1/664:666, 1/A1/1163:1165 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_9RHU_034 | 1/A1/666:672, 1/A1/1162:1163 | No text annotation | homologous IL_9PN5_174 IL_20847.4 | |
| IL_9RHU_035 | 1/A1/674:676, 1/A1/1031:1033 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9RHU_036 | 1/A1/677:681, 1/A1/1026:1030 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9RHU_040 | 1/A1/803:804, 1/A1/861:864 | No text annotation | homologous IL_9H3G_192 IL_73108.5 | |
| IL_9RHU_041 | 1/A1/806:808, 1/A1/857:859 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.6 | |
| IL_9RHU_042 | 1/A1/808:816, 1/A1/850:857 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9RHU_043 | 1/A1/834:835, 1/A1/839:842 | No text annotation | geometric IL_9AXU_100 IL_44609.5 | |
| IL_9RHU_044 | 1/A1/875:877, 1/A1/911:913 | Isolated non-canonical cWW pair | geometric IL_8GLP_233 IL_01003.7 | |
| IL_9RHU_045 | 1/A1/878:880, 1/A1/908:910 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_9RHU_046 | 1/A1/923:924, 1/A1/1020:1023 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.5 | |
| IL_9RHU_047 | 1/A1/926:928, 1/A1/1015:1018 | Isolated non-canonical cWW pair | homologous IL_9H3G_198 IL_01003.7 | |
| IL_9RHU_048 | 1/A1/929:932, 1/A1/1011:1014 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.5 | |
| IL_9RHU_049 | 1/A1/932:936, 1/A1/1008:1011 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9RHU_050 | 1/A1/943:946, 1/A1/982:985 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9RHU_051 | 1/A1/953:957, 1/A1/968:975 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9RHU_052 | 1/A1/1043:1048, 1/A1/1072:1074 | No text annotation | homologous IL_9H3G_203 IL_31690.2 | |
| IL_9RHU_053 | 1/A1/1048:1052, 1/A1/1068:1072 | No text annotation | homologous IL_9PN5_190 IL_05821.4 | |
| IL_9RHU_054 | 1/A1/1092:1094, 1/A1/1153:1159 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9RHU_055 | 1/A1/1099:1102, 1/A1/1132:1135 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9RHU_056 | 1/A1/1102:1104, 1/A1/1130:1132 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.5 | |
| IL_9RHU_057 | 1/A1/1109:1111, 1/A1/1124:1125 | Minor groove platform | geometric IL_8GLP_246 IL_26092.1 | |
| IL_9RHU_058 | 1/A1/1169:1176, 1/A1/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9RHU_059 | 1/A1/1204:1205, 1/A1/1695:1697 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9RHU_060 | 1/A1/1207:1209, 1/A1/1692:1693 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9RHU_061 | 1/A1/1215:1218, 1/A1/1682:1686 | No text annotation | homologous IL_9H3G_212 IL_63596.15 | |
| IL_9RHU_062 | 1/A1/1231:1233, 1/A1/1527:1529 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.7 | |
| IL_9RHU_063 | 1/A1/1236:1237, 1/A1/1522:1524 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_9RHU_064 | 1/A1/1271:1273, 1/A1/1511:1513 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_9RHU_065 | 1/A1/1282:1288, 1/A1/1315:1317 | No text annotation | ||
| IL_9RHU_066 | 1/A1/1282:1291, 1/A1/1310:1317 | No text annotation | ||
| IL_9RHU_067 | 1/A1/1288:1291, 1/A1/1310:1315 | No text annotation | ||
| IL_9RHU_068 | 1/A1/1292:1294, 1/A1/1307:1309 | No text annotation | homologous IL_9H3G_217 IL_75737.2 | |
| IL_9RHU_069 | 1/A1/1326:1328, 1/A1/1503:1504 | Single bulged U | homologous IL_9PN5_203 IL_97561.8 | |
| IL_9RHU_070 | 1/A1/1330:1334, 1/A1/1499:1501 | No text annotation | geometric IL_9PN5_204 IL_82453.4 | |
| IL_9RHU_071 | 1/A1/1330:1336, 1/A1/1493:1501 | No text annotation | ||
| IL_9RHU_072 | 1/A1/1334:1336, 1/A1/1493:1499 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9RHU_073 | 1/A1/1338:1339, 1/A1/1489:1491 | Single bulged A | homologous IL_9H3G_222 IL_14190.5 | |
| IL_9RHU_074 | 1/A1/1348:1350, 1/A1/1381:1383 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9RHU_075 | 1/A1/1364:1366, 1/A1/1375:1376 | Minor groove platform | homologous IL_9PN5_211 IL_37129.1 | |
| IL_9RHU_076 | 1/A1/1396:1400, 1/A1/1448:1451 | No text annotation | geometric IL_8GLP_337 IL_37443.2 | |
| IL_9RHU_077 | 1/A1/1403:1406, 1/A1/1442:1445 | No text annotation | homologous IL_9PN5_213 IL_78800.5 | |
| IL_9RHU_078 | 1/A1/1409:1410, 1/A1/1433:1439 | No text annotation | homologous IL_9PN5_214 IL_71421.6 | |
| IL_9RHU_079 | 1/A1/1413:1414, 1/A1/1428:1430 | Single bulged G | geometric IL_8GLP_268 IL_28408.5 | |
| IL_9RHU_080 | 1/A1/1417:1418, 1/A1/1423:1425 | Single bulged C | geometric IL_8GLP_055 IL_05642.6 | |
| IL_9RHU_081 | 1/A1/1538:1540, 1/A1/1595:1597 | Isolated non-canonical cWW pair | geometric IL_8GLP_270 IL_71625.6 | |
| IL_9RHU_082 | 1/A1/1542:1551, 1/A1/1583:1593 | No text annotation | ||
| IL_9RHU_083 | 1/A1/1551:1559, 1/A1/1578:1583 | No text annotation | ||
| IL_9RHU_084 | 1/A1/1561:1563, 1/A1/1574:1576 | No text annotation | homologous IL_9H3G_231 IL_81485.1 | |
| IL_9RHU_085 | 1/A1/1605:1611, 1/A1/1630:1636 | No text annotation | ||
| IL_9RHU_086 | 1/A1/1701:1703, 1/A1/1834:1837 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9RHU_087 | 1/A1/1703:1706, 1/A1/1830:1834 | No text annotation | homologous IL_9PN5_221 IL_25873.5 | |
| IL_9RHU_088 | 1/A1/1707:1709, 1/A1/1827:1829 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9RHU_089 | 1/A1/1709:1712, 1/A1/1823:1827 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9RHU_090 | 1/A1/1715:1717, 1/A1/1818:1820 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9RHU_091 | 1/A1/1718:1721, 1/A1/1814:1817 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9RHU_092 | 1/A1/1721:1723, 1/A1/1813:1814 | Single bulged U | homologous IL_9PN5_226 IL_97561.8 | |
| IL_9RHU_093 | 1/A1/1730:1732, 1/A1/1804:1806 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9RHU_094 | 1/A1/1734:1737, 1/A1/1799:1802 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9RHU_095 | 1/A1/1740:1742, 1/A1/1794:1796 | Isolated non-canonical cWW pair | geometric IL_8GLP_283 IL_01003.7 | |
| IL_9RHU_096 | 1/A1/1743:1747, 1/A1/1789:1793 | No text annotation | homologous IL_9PN5_231 IL_15190.5 | |
| IL_9RHU_097 | 1/A1/1751:1752, 1/A1/1783:1785 | Single bulged C | geometric IL_3W3S_001 IL_05642.6 | |
| IL_9RHU_099 | 1/A3/6:7, 1/C3/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.6 | |
| IL_9RHU_100 | 1/A3/12:14, 1/C3/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.8 | |
| IL_9RHU_101 | 1/A3/16:18, 1/C3/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_19025.1 | |
| IL_9RHU_102 | 1/A3/26:27, 1/A3/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.6 | |
| IL_9RHU_103 | 1/A3/30:37, 1/A3/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.4 | |
| IL_9RHU_104 | 1/A3/81:88, 1/A3/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.6 | |
| IL_9RHU_105 | 1/A3/118:121, 1/A3/152:153 | No text annotation | geometric IL_8GLP_007 IL_36175.2 | |
| IL_9RHU_106 | 1/A3/118:122, 1/A3/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_9RHU_107 | 1/A3/121:122, 1/A3/147:152 | No text annotation | homologous IL_8GLP_008 IL_10396.4 | |
| IL_9RHU_108 | 1/A3/125:126, 1/A3/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.6 | |
| IL_9RHU_109 | 1/A3/168:173, 1/A3/263:267 | No text annotation | ||
| IL_9RHU_111 | 1/A3/184:189, 1/A3/252:253 | No text annotation | ||
| IL_9RHU_112 | 1/A3/195:196, 1/A3/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.6 | |
| IL_9RHU_113 | 1/A3/199:201, 1/A3/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.8 | |
| IL_9RHU_114 | 1/A3/339:342, 1/C3/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_26092.1 | |
| IL_9RHU_115 | 1/A3/348:350, 1/C3/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.5 | |
| IL_9RHU_116 | 1/A3/387:390, 1/A3/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.4 | |
| IL_9RHU_117 | 1/A3/415:421, 1/C3/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.4 | |
| IL_9RHU_118 | 1/A3/443:444, 1/A3/1246:1248 | Single bulged A | geometric IL_9H3G_113 IL_14190.5 | |
| IL_9RHU_119 | 1/A3/444:446, 1/A3/1244:1246 | Isolated non-canonical cWW pair | geometric IL_9TEL_002 IL_01003.7 | |
| IL_9RHU_120 | 1/A3/448:450, 1/A3/1241:1242 | Single bulged C | geometric IL_8GLP_083 IL_05642.6 | |
| IL_9RHU_121 | 1/A3/459:460, 1/A3/689:691 | Single bulged C | geometric IL_1S03_002 IL_05642.6 | |
| IL_9RHU_122 | 1/A3/462:464, 1/A3/685:687 | Isolated non-canonical cWW pair | homologous IL_8GLP_025 IL_01003.7 | |
| IL_9RHU_123 | 1/A3/466:472, 1/A3/676:683 | No text annotation | homologous IL_8GLP_026 NA | |
| IL_9RHU_124 | 1/A3/481:483, 1/A3/666:667 | Single bulged U | geometric IL_2R8S_004 IL_97561.8 | |
| IL_9RHU_125 | 1/A3/483:486, 1/A3/665:666 | No text annotation | ||
| IL_9RHU_126 | 1/A3/488:489, 1/A3/659:663 | No text annotation | geometric IL_9I0V_004 IL_71421.6 | |
| IL_9RHU_127 | 1/A3/492:494, 1/A3/655:656 | Single bulged U | geometric IL_8TQX_002 IL_97561.8 | |
| IL_9RHU_128 | 1/A3/498:500, 1/A3/650:651 | No text annotation | ||
| IL_9RHU_129 | 1/A3/501:506, 1/A3/648:649 | No text annotation | ||
| IL_9RHU_130 | 1/A3/510:512, 1/A3/643:644 | Single bulged A | homologous IL_8GLP_032 IL_14190.5 | |
| IL_9RHU_131 | 1/A3/514:517, 1/A3/640:641 | No text annotation | geometric IL_9AXU_062 IL_71421.6 | |
| IL_9RHU_133 | 1/A3/703:704, 1/A3/1230:1232 | No text annotation | homologous IL_8GLP_035 IL_09092.2 | |
| IL_9RHU_134 | 1/A3/717:718, 1/A3/842:845 | No text annotation | geometric IL_8GLP_035 IL_09092.2 | |
| IL_9RHU_135 | 1/A3/721:725, 1/A3/838:839 | No text annotation | geometric IL_8GLP_036 IL_75501.2 | |
| IL_9RHU_136 | 1/A3/726:729, 1/A3/827:837 | No text annotation | ||
| IL_9RHU_137 | 1/A3/731:734, 1/A3/822:825 | No text annotation | geometric IL_8B0X_156 IL_44609.5 | |
| IL_9RHU_138 | 1/A3/740:747, 1/A3/808:816 | No text annotation | geometric IL_8GLP_040 IL_25001.3 | |
| IL_9RHU_141 | 1/A3/988:989, 1/A3/1123:1125 | Single bulged A | geometric IL_8GLP_041 IL_14190.5 | |
| IL_9RHU_142 | 1/A3/997:999, 1/A3/1104:1108 | No text annotation | geometric IL_8GLP_043 IL_84227.2 | |
| IL_9RHU_143 | 1/A3/1001:1002, 1/A3/1100:1102 | Single bulged C | geometric IL_8GLP_044 IL_05642.6 | |
| IL_9RHU_144 | 1/A3/1007:1009, 1/A3/1093:1095 | Isolated non-canonical cWW pair | geometric IL_4YHW_002 IL_01003.7 | |
| IL_9RHU_146 | 1/A3/1064:1066, 1/A3/1077:1079 | Isolated cWH basepair | geometric IL_2R1S_002 IL_10892.5 | |
| IL_9RHU_148 | 1/A3/1301:1304, 1/A3/1323:1326 | No text annotation | ||
| IL_9RHU_149 | 1/A3/1301:1305, 1/A3/1320:1326 | No text annotation | ||
| IL_9RHU_150 | 1/A3/1304:1305, 1/A3/1320:1323 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_9RHU_151 | 1/A3/1380:1384, 1/A3/1410:1415 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9RHU_152 | 1/A3/1386:1389, 1/A3/1405:1408 | Double sheared | homologous IL_8GLP_052 IL_58355.5 | |
| IL_9RHU_153 | 1/A3/1390:1392, 1/A3/1403:1404 | Single bulged C | geometric IL_6XKO_001 IL_05642.6 | |
| IL_9RHU_154 | 1/A3/1422:1423, 1/A3/1451:1453 | Single bulged A | homologous IL_8GLP_053 IL_14190.5 | |
| IL_9RHU_155 | 1/A3/1429:1431, 1/A3/1444:1445 | Single stack bend | homologous IL_8GLP_054 IL_15011.6 | |
| IL_9RHU_156 | 1/A3/1434:1435, 1/A3/1439:1441 | Single bulged C | homologous IL_8GLP_055 IL_05642.6 | |
| IL_9RHU_157 | 1/A3/1475:1477, 1/A3/1610:1612 | Isolated non-canonical cWW pair | homologous IL_9AXU_025 IL_01003.7 | |
| IL_9RHU_158 | 1/A3/1477:1481, 1/A3/1603:1610 | No text annotation | homologous IL_8GLP_290 IL_73855.4 | |
| IL_9RHU_159 | 1/A3/1500:1501, 1/A3/1567:1569 | Single bulged A | homologous IL_8GLP_057 IL_14190.5 | |
| IL_9RHU_160 | 1/A3/1505:1506, 1/A3/1531:1533 | Single bulged G | homologous IL_8GLP_058 IL_28408.5 | |
| IL_9RHU_161 | 1/A3/1506:1510, 1/A3/1527:1531 | No text annotation | homologous IL_8GLP_059 IL_15190.5 | |
| IL_9RHU_162 | 1/A3/1541:1544, 1/A3/1560:1562 | No text annotation | homologous IL_8GLP_060 IL_36931.5 | |
| IL_9RHU_163 | 1/A3/1545:1547, 1/A3/1558:1559 | Single bulged U | homologous IL_8GLP_061 IL_97561.8 | |
| IL_9RHU_164 | 1/A3/1579:1581, 1/A3/1591:1595 | No text annotation | homologous IL_9AXU_032 IL_89509.4 | |
| IL_9RHU_165 | 1/A3/1626:1628, 1/A3/1637:1639 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_9RHU_166 | 1/A3/1641:1643, 1/A3/1787:1790 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9RHU_167 | 1/A3/1649:1660, 1/A3/1780:1781 | No text annotation | homologous IL_9AXU_035 NA | |
| IL_9RHU_168 | 1/A3/1662:1664, 1/A3/1777:1778 | Single bulged G | homologous IL_8GLP_066 IL_28408.5 | |
| IL_9RHU_169 | 1/A3/1671:1676, 1/A3/1731:1736 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_9RHU_170 | 1/A3/1676:1677, 1/A3/1729:1731 | Minor groove platform | homologous IL_9AXU_038 IL_37129.1 | |
| IL_9RHU_171 | 1/A3/1678:1683, 1/A3/1725:1728 | No text annotation | homologous IL_9H3G_046 IL_16301.4 | |
| IL_9RHU_172 | 1/A3/1685:1688, 1/A3/1720:1723 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_9RHU_173 | 1/A3/1688:1690, 1/A3/1718:1720 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.7 | |
| IL_9RHU_174 | 1/A3/1692:1695, 1/A3/1715:1716 | No text annotation | homologous IL_8GLP_070 IL_73108.5 | |
| IL_9RHU_176 | 1/A3/1753:1755, 1/A3/1762:1763 | Single bulged G | homologous IL_8GLP_072 IL_28408.5 | |
| IL_9RHU_177 | 1/A3/1797:1799, 1/A3/1813:1815 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.7 | |
| IL_9RHU_179 | 1/A3/1844:1848, 1/A3/2006:2010 | UAA/GAN | homologous IL_8GLP_075 IL_08938.4 | |
| IL_9RHU_180 | 1/A3/1850:1857, 1/A3/2003:2004 | No text annotation | homologous IL_8GLP_076 IL_11411.4 | |
| IL_9RHU_181 | 1/A3/1857:1859, 1/A3/2002:2003 | Single bulged G | homologous IL_8GLP_077 IL_28408.5 | |
| IL_9RHU_182 | 1/A3/1859:1861, 1/A3/2001:2002 | Single bulged C | homologous IL_8GLP_078 IL_05642.6 | |
| IL_9RHU_183 | 1/A3/1865:1872, 1/A3/1992:1997 | No text annotation | homologous IL_8GLP_079 IL_39054.4 | |
| IL_9RHU_184 | 1/A3/1872:1883, 1/A3/1977:1992 | No text annotation | homologous IL_8GLP_080 IL_34501.4 | |
| IL_9RHU_185 | 1/A3/1885:1887, 1/A3/1974:1975 | Single bulged U | homologous IL_8GLP_081 IL_97561.8 | |
| IL_9RHU_186 | 1/A3/1896:1904, 1/A3/1961:1965 | Kink-turn | homologous IL_8GLP_082 IL_99692.4 | |
| IL_9RHU_187 | 1/A3/1912:1916, 1/A3/1928:1932 | No text annotation | homologous IL_9AXU_052 NA | |
| IL_9RHU_188 | 1/A3/1940:1944, 1/A3/1953:1955 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.5 | |
| IL_9RHU_189 | 1/A3/2022:2024, 1/A3/2115:2116 | Single bulged C | homologous IL_8GLP_083 IL_05642.6 | |
| IL_9RHU_190 | 1/A3/2133:2135, 1/A3/2185:2188 | No text annotation | homologous IL_8GLP_084 IL_84227.2 | |
| IL_9RHU_191 | 1/A3/2142:2144, 1/A3/2177:2178 | Single bulged A | homologous IL_8GLP_085 IL_14190.5 | |
| IL_9RHU_192 | 1/A3/2145:2152, 1/A3/2172:2176 | Kink-turn | homologous IL_8GLP_086 IL_90775.4 | |
| IL_9RHU_193 | 1/A3/2155:2157, 1/A3/2168:2169 | Single bulged A | homologous IL_8GLP_087 IL_14190.5 | |
| IL_9RHU_194 | 1/A3/2201:2207, 1/A3/3590:3595 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.4 | |
| IL_9RHU_195 | 1/A3/2249:2252, 1/A3/2626:2627 | Major groove platform; stack outside cWW | geometric IL_8GLP_089 IL_74641.5 | |
| IL_9RHU_196 | 1/A3/2258:2262, 1/A3/2270:2272 | No text annotation | homologous IL_8GLP_301 IL_06671.4 | |
| IL_9RHU_197 | 1/A3/2289:2293, 1/A3/2352:2357 | UAA/GAN | homologous IL_8GLP_091 IL_08938.4 | |
| IL_9RHU_198 | 1/A3/2320:2322, 1/A3/2342:2343 | Minor groove platform | homologous IL_8GLP_092 IL_37129.1 | |
| IL_9RHU_199 | 1/A3/2385:2390, 1/A3/2615:2617 | No text annotation | homologous IL_9AXU_061 IL_75527.5 | |
| IL_9RHU_200 | 1/A3/2392:2393, 1/A3/2611:2613 | Single bulged U | homologous IL_8GLP_095 IL_97561.8 | |
| IL_9RHU_201 | 1/A3/2432:2436, 1/A3/2595:2599 | No text annotation | homologous IL_8GLP_096 IL_15190.5 | |
| IL_9RHU_202 | 1/A3/2456:2457, 1/A3/2567:2569 | Single bulged A | homologous IL_8GLP_097 IL_14190.5 | |
| IL_9RHU_203 | 1/A3/2457:2458, 1/A3/2565:2567 | Single stack bend | homologous IL_8GLP_098 IL_15011.6 | |
| IL_9RHU_204 | 1/A3/2489:2491, 1/A3/2528:2531 | No text annotation | homologous IL_8GLP_099 IL_87316.5 | |
| IL_9RHU_205 | 1/A3/2494:2496, 1/A3/2524:2525 | Single bulged G | homologous IL_8GLP_100 IL_28408.5 | |
| IL_9RHU_206 | 1/A3/2499:2505, 1/A3/2515:2521 | No text annotation | homologous IL_8GLP_101 IL_93476.4 | |
| IL_9RHU_207 | 1/A3/2547:2548, 1/A3/2553:2555 | Single bulged G | homologous IL_8GLP_102 IL_28408.5 | |
| IL_9RHU_208 | 1/A3/2675:2681, 1/A3/3582:3585 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9RHU_209 | 1/A3/2687:2689, 1/A3/3574:3576 | No text annotation | homologous IL_9AXU_071 IL_10432.4 | |
| IL_9RHU_210 | 1/A3/2690:2693, 1/A3/3572:3573 | Major groove platform; stack outside cWW | geometric IL_8GLP_304 IL_74641.5 | |
| IL_9RHU_211 | 1/A3/2690:2698, 1/A3/3569:3573 | No text annotation | geometric IL_8GLP_305 IL_80252.4 | |
| IL_9RHU_212 | 1/A3/2693:2698, 1/A3/3569:3572 | No text annotation | homologous IL_8GLP_107 IL_28217.4 | |
| IL_9RHU_213 | 1/A3/2710:2715, 1/A3/2720:2726 | No text annotation | homologous IL_8GLP_108 IL_20700.4 | |
| IL_9RHU_214 | 1/A3/2732:2734, 1/A3/3342:3344 | Isolated non-canonical cWW pair | homologous IL_8GLP_109 IL_01003.7 | |
| IL_9RHU_215 | 1/A3/2739:2740, 1/A3/3334:3337 | No text annotation | homologous IL_8GLP_110 IL_18824.4 | |
| IL_9RHU_216 | 1/A3/3364:3365, 1/A3/3559:3561 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_9RHU_217 | 1/A3/3392:3397, 1/A3/3409:3416 | No text annotation | homologous IL_8GLP_114 IL_14684.4 | |
| IL_9RHU_218 | 1/A3/3432:3435, 1/A3/3481:3482 | No text annotation | homologous IL_8GLP_116 IL_55206.4 | |
| IL_9RHU_219 | 1/A3/3436:3437, 1/A3/3477:3480 | No text annotation | homologous IL_8GLP_117 IL_71421.6 | |
| IL_9RHU_220 | 1/A3/3440:3442, 1/A3/3473:3474 | Single stack bend | homologous IL_8GLP_119 IL_15011.6 | |
| IL_9RHU_221 | 1/A3/3442:3446, 1/A3/3471:3473 | No text annotation | homologous IL_8GLP_120 IL_67721.1 | |
| IL_9RHU_222 | 1/A3/3447:3453, 1/A3/3464:3470 | No text annotation | homologous IL_9H3G_097 IL_65359.4 | |
| IL_9RHU_223 | 1/A3/3512:3513, 1/A3/3543:3546 | No text annotation | geometric IL_9AXU_083 IL_24886.5 | |
| IL_9RHU_224 | 1/A3/3513:3524, 1/A3/3540:3543 | No text annotation | homologous IL_9PN5_087 IL_84014.4 | |
| IL_9RHU_225 | 1/A3/3627:3630, 1/A3/4309:4311 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9RHU_226 | 1/A3/3632:3634, 1/A3/4304:4307 | No text annotation | homologous IL_8GLP_129 IL_80025.4 | |
| IL_9RHU_227 | 1/A3/3645:3647, 1/A3/4134:4135 | Single bulged U | homologous IL_9PN5_090 IL_97561.8 | |
| IL_9RHU_228 | 1/A3/3648:3649, 1/A3/4130:4133 | Minor groove platform | homologous IL_8GLP_131 IL_37129.1 | |
| IL_9RHU_229 | 1/A3/3659:3661, 1/A3/3927:3930 | No text annotation | homologous IL_8GLP_133 IL_87316.5 | |
| IL_9RHU_230 | 1/A3/3680:3681, 1/A3/3791:3793 | Single stack bend | geometric IL_8OI5_088 IL_15011.6 | |
| IL_9RHU_232 | 1/A3/3702:3705, 1/A3/3766:3779 | No text annotation | geometric IL_3U4M_003 IL_75283.2 | |
| IL_9RHU_233 | 1/A3/3810:3816, 1/A3/3907:3910 | No text annotation | homologous IL_8GLP_135 IL_52092.4 | |
| IL_9RHU_234 | 1/A3/3823:3825, 1/A3/3840:3841 | Single bulged C | geometric IL_8GLP_178 IL_05642.6 | |
| IL_9RHU_235 | 1/A3/3861:3863, 1/A3/3895:3897 | Isolated cWH basepair | geometric IL_8GLP_157 IL_10892.5 | |
| IL_9RHU_237 | 1/A3/3937:3938, 1/A3/3948:3950 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.5 | |
| IL_9RHU_238 | 1/A3/3989:3991, 1/A3/4009:4013 | No text annotation | homologous IL_8GLP_138 IL_14250.4 | |
| IL_9RHU_239 | 1/A3/4037:4039, 1/A3/4063:4064 | Single bulged A | geometric IL_9AXU_093 IL_14190.5 | |
| IL_9RHU_240 | 1/A3/4041:4044, 1/A3/4058:4061 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.5 | |
| IL_9RHU_241 | 1/A3/4093:4096, 1/A3/4110:4111 | No text annotation | homologous IL_8GLP_141 IL_57267.1 | |
| IL_9RHU_242 | 1/A3/4146:4147, 1/A3/4188:4190 | Major groove platform | homologous IL_9H3G_116 IL_48076.11 | |
| IL_9RHU_243 | 1/A3/4147:4149, 1/A3/4186:4188 | Isolated non-canonical cWW pair | homologous IL_9H3G_117 IL_01003.7 | |
| IL_9RHU_244 | 1/A3/4149:4151, 1/A3/4185:4186 | No text annotation | homologous IL_9H3G_118 IL_46637.5 | |
| IL_9RHU_245 | 1/A3/4151:4153, 1/A3/4181:4185 | No text annotation | homologous IL_8GLP_143 IL_36931.5 | |
| IL_9RHU_246 | 1/A3/4158:4162, 1/A3/4172:4176 | No text annotation | homologous IL_8GLP_145 IL_87767.5 | |
| IL_9RHU_247 | 1/A3/4199:4200, 1/A3/4272:4274 | No text annotation | homologous IL_9PN5_102 IL_46637.5 | |
| IL_9RHU_248 | 1/A3/4202:4204, 1/A3/4266:4270 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9RHU_249 | 1/A3/4204:4205, 1/A3/4263:4266 | No text annotation | homologous IL_9PN5_104 IL_44609.5 | |
| IL_9RHU_250 | 1/A3/4212:4214, 1/A3/4235:4237 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_9RHU_251 | 1/A3/4212:4216, 1/A3/4231:4237 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9RHU_252 | 1/A3/4214:4216, 1/A3/4231:4235 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9RHU_253 | 1/A3/4241:4243, 1/A3/4249:4251 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.7 | |
| IL_9RHU_254 | 1/A3/4283:4284, 1/A3/4293:4295 | Single bulged A | homologous IL_8GLP_154 IL_14190.5 | |
| IL_9RHU_255 | 1/A3/4326:4328, 1/A3/4467:4469 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.5 | |
| IL_9RHU_256 | 1/A3/4328:4331, 1/A3/4463:4467 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_9RHU_257 | 1/A3/4336:4338, 1/A3/4364:4366 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.6 | |
| IL_9RHU_258 | 1/A3/4342:4349, 1/A3/4354:4360 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.2 | |
| IL_9RHU_259 | 1/A3/4370:4375, 1/A3/4415:4419 | No text annotation | homologous IL_8GLP_317 IL_31690.2 | |
| IL_9RHU_260 | 1/A3/4378:4383, 1/A3/4408:4412 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_9RHU_261 | 1/A3/4384:4386, 1/A3/4405:4407 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.5 | |
| IL_9RHU_262 | 1/A3/4387:4388, 1/A3/4401:4404 | No text annotation | homologous IL_8GLP_163 IL_44609.5 | |
| IL_9RHU_263 | 1/A3/4426:4431, 1/A3/4451:4456 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_9RHU_264 | 1/A3/4486:4489, 1/A3/4697:4698 | Single bulged C | homologous IL_8GLP_165 IL_05642.6 | |
| IL_9RHU_265 | 1/A3/4490:4493, 1/A3/4693:4696 | Tandem non-canonical cWW pairs | homologous IL_8GLP_166 IL_15225.5 | |
| IL_9RHU_266 | 1/A3/4496:4498, 1/A3/4687:4690 | No text annotation | homologous IL_8GLP_167 IL_31990.1 | |
| IL_9RHU_267 | 1/A3/4503:4512, 1/A3/4608:4616 | No text annotation | homologous IL_8GLP_168 NA | |
| IL_9RHU_268 | 1/A3/4516:4519, 1/A3/4602:4604 | Isolated non-canonical cWW pair | homologous IL_8GLP_169 IL_71625.6 | |
| IL_9RHU_269 | 1/A3/4624:4627, 1/A3/4670:4673 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_71194.5 | |
| IL_9RHU_270 | 1/A3/4630:4635, 1/A3/4663:4667 | No text annotation | homologous IL_8GLP_171 NA | |
| IL_9RHU_272 | 1/A3/4711:4714, 1/A3/4722:4725 | Tandem non-canonical cWW pairs | homologous IL_9AXU_117 IL_71194.5 | |
| IL_9RHU_273 | 1/A3/4731:4733, 1/A3/4796:4798 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.7 | |
| IL_9RHU_274 | 1/A3/4735:4736, 1/A3/4792:4794 | Single bulged C | geometric IL_1KUQ_002 IL_05642.6 | |
| IL_9RHU_275 | 1/A3/4739:4741, 1/A3/4784:4789 | No text annotation | homologous IL_9H3G_143 IL_00086.4 | |
| IL_9RHU_276 | 1/A3/4742:4748, 1/A3/4778:4783 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_9RHU_277 | 1/A3/4751:4753, 1/A3/4774:4775 | Single bulged C | homologous IL_8GLP_178 IL_05642.6 | |
| IL_9RHU_278 | 1/A3/4753:4756, 1/A3/4771:4774 | Double sheared | homologous IL_8GLP_179 IL_58355.5 | |
| IL_9RHU_279 | 1/B3/15:16, 1/B3/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.6 | |
| IL_9RHU_280 | 1/B3/21:27, 1/B3/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_9RHU_281 | 1/B3/28:29, 1/B3/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.5 | |
| IL_9RHU_282 | 1/B3/32:36, 1/B3/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9RHU_283 | 1/B3/71:78, 1/B3/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8QYX_169 IL_62879.2 | |
| IL_9RHU_284 | 1/B3/79:81, 1/B3/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_81485.1 | |
| IL_9RHU_285 | 1/B3/82:85, 1/B3/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.7 | |
| IL_9RHU_286 | 1/C3/64:66, 1/C3/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9RHU_015 | Single stack bend | ||
| IL_9RHU_027 | Isolated non-canonical cWW pair | ||
| IL_9RHU_037 | Isolated non-canonical cWW pair | ||
| IL_9RHU_038 | No text annotation | ||
| IL_9RHU_039 | Minor groove platform | ||
| IL_9RHU_098 | No text annotation | ||
| IL_9RHU_110 | Major groove platform | ||
| IL_9RHU_132 | No text annotation | ||
| IL_9RHU_139 | No text annotation | ||
| IL_9RHU_140 | No text annotation | ||
| IL_9RHU_145 | Single bulged U | ||
| IL_9RHU_147 | No text annotation | ||
| IL_9RHU_175 | Tandem non-canonical cWW pairs | ||
| IL_9RHU_178 | No text annotation | ||
| IL_9RHU_231 | No text annotation | ||
| IL_9RHU_236 | Single bulged C | ||
| IL_9RHU_271 | Single bulged C |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9RHU_001 | 1/A1/40:41, 1/A1/482:488, 1/A1/513:515 | No text annotation | geometric J3_9H3G_028 J3_58657.4 | |
| J3_9RHU_002 | 1/A1/40:47, 1/A1/480:488, 1/A1/513:515 | No text annotation | homologous J3_9H3G_029 J3_63856.4 | |
| J3_9RHU_003 | 1/A1/223:239, 1/A1/281:289, 1/A1/296:299 | No text annotation | ||
| J3_9RHU_004 | 1/A1/683:686, 1/A1/918:923, 1/A1/1023:1024 | No text annotation | ||
| J3_9RHU_005 | 1/A1/683:686, 1/A1/918:924, 1/A1/1020:1024 | No text annotation | ||
| J3_9RHU_006 | 1/A1/817:820, 1/A1/830:832, 1/A1/844:849 | No text annotation | homologous J3_9H3G_032 J3_97642.5 | |
| J3_9RHU_007 | 1/A1/939:942, 1/A1/986:994, 1/A1/1001:1005 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9RHU_008 | 1/A1/1095:1097, 1/A1/1137:1141, 1/A1/1148:1152 | No text annotation | ||
| J3_9RHU_009 | 1/A1/1219:1222, 1/A1/1646:1652, 1/A1/1674:1681 | No text annotation | homologous J3_9H3G_035 J3_85722.4 | |
| J3_9RHU_010 | 1/A1/1226:1229, 1/A1/1531:1533, 1/A1/1639:1642 | No text annotation | homologous J3_9H3G_036 J3_44359.4 | |
| J3_9RHU_011 | 1/A1/1238:1245, 1/A1/1256:1267, 1/A1/1517:1521 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9RHU_012 | 1/A1/1273:1278, 1/A1/1321:1325, 1/A1/1505:1511 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9RHU_013 | 1/A1/1341:1346, 1/A1/1385:1390, 1/A1/1482:1487 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_9RHU_014 | 1/A1/1351:1352, 1/A1/1361:1364, 1/A1/1376:1380 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9RHU_015 | 1/A1/1392:1396, 1/A1/1451:1457, 1/A1/1471:1480 | No text annotation | ||
| J3_9RHU_016 | 1/A1/1533:1537, 1/A1/1598:1605, 1/A1/1636:1639 | No text annotation | homologous J3_9H3G_043 J3_03192.4 | |
| J3_9RHU_017 | 1/A3/112:116, 1/A3/155:160, 1/A3/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_9RHU_018 | 1/A3/196:199, 1/A3/215:228, 1/A3/240:244 | No text annotation | homologous J3_8GLP_023 NA | |
| J3_9RHU_019 | 1/A3/351:367, 1/A3/374:379, 1/C3/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.4 | |
| J3_9RHU_020 | 1/A3/380:387, 1/A3/414:415, 1/C3/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.4 | |
| J3_9RHU_021 | 1/A3/380:390, 1/A3/401:415, 1/C3/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.4 | |
| J3_9RHU_022 | 1/A3/451:455, 1/A3/695:699, 1/A3/1236:1240 | No text annotation | ||
| J3_9RHU_023 | 1/A3/1486:1492, 1/A3/1577:1579, 1/A3/1595:1598 | No text annotation | homologous J3_9AXU_009 J3_46658.4 | |
| J3_9RHU_024 | 1/A3/1501:1503, 1/A3/1535:1539, 1/A3/1564:1567 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9RHU_025 | 1/A3/1665:1666, 1/A3/1741:1745, 1/A3/1771:1776 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9RHU_026 | 1/A3/1908:1910, 1/A3/1934:1940, 1/A3/1955:1957 | No text annotation | geometric J3_5D8H_001 J3_37832.2 | |
| J3_9RHU_027 | 1/A3/2236:2242, 1/A3/2648:2650, 1/A3/2662:2665 | No text annotation | homologous J3_8GLP_004 J3_05025.4 | |
| J3_9RHU_028 | 1/A3/2245:2248, 1/A3/2628:2634, 1/A3/2643:2645 | No text annotation | homologous J3_8GLP_005 J3_76012.4 | |
| J3_9RHU_029 | 1/A3/2283:2288, 1/A3/2358:2362, 1/A3/2379:2380 | No text annotation | homologous J3_8GLP_030 J3_94309.4 | |
| J3_9RHU_030 | 1/A3/2294:2299, 1/A3/2308:2319, 1/A3/2344:2351 | No text annotation | homologous J3_8GLP_031 J3_53783.2 | |
| J3_9RHU_031 | 1/A3/2394:2398, 1/A3/2415:2418, 1/A3/2600:2610 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_9RHU_032 | 1/A3/2418:2419, 1/A3/2428:2432, 1/A3/2599:2600 | No text annotation | homologous J3_8GLP_032 J3_05348.4 | |
| J3_9RHU_033 | 1/A3/2441:2445, 1/A3/2580:2581, 1/A3/2585:2590 | No text annotation | homologous J3_9H3G_020 J3_08594.4 | |
| J3_9RHU_034 | 1/A3/3669:3671, 1/A3/3802:3806, 1/A3/3914:3919 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9RHU_035 | 1/A3/3819:3822, 1/A3/3842:3857, 1/A3/3901:3904 | No text annotation | homologous J3_8GLP_008 NA | |
| J3_9RHU_036 | 1/A3/3974:3976, 1/A3/4077:4088, 1/A3/4116:4121 | No text annotation | homologous J3_8GLP_034 J3_04772.4 | |
| J3_9RHU_037 | 1/A3/3987:3989, 1/A3/4013:4015, 1/A3/4024:4029 | No text annotation | homologous J3_8GLP_009 J3_05327.4 | |
| J3_9RHU_038 | 1/A3/4209:4212, 1/A3/4237:4239, 1/A3/4253:4259 | No text annotation | homologous J3_9H3G_024 J3_44047.4 | |
| J3_9RHU_039 | 1/A3/4498:4501, 1/A3/4618:4622, 1/A3/4675:4687 | No text annotation | homologous J3_8GLP_036 NA | |
| J3_9RHU_040 | 1/A3/4709:4711, 1/A3/4725:4730, 1/A3/4799:4802 | No text annotation | homologous J3_8GLP_037 NA | |
| J3_9RHU_041 | 1/B3/9:14, 1/B3/65:66, 1/B3/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J3_9RHU_042 | 1/C3/44:45, 1/C3/58:64, 1/C3/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.4 | |
| J4_9RHU_001 | 1/A1/98:106, 1/A1/356:358, 1/A1/406:410, 1/A1/432:433 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_9RHU_002 | 1/A1/672:674, 1/A1/1033:1038, 1/A1/1079:1090, 1/A1/1161:1162 | No text annotation | homologous J4_9H3G_014 J4_14595.4 | |
| J4_9RHU_003 | 1/A3/111:112, 1/A3/278:283, 1/A3/304:310, 1/A3/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.4 | |
| J4_9RHU_004 | 1/A3/196:199, 1/A3/215:222, 1/A3/226:228, 1/A3/240:244 | No text annotation | ||
| J4_9RHU_005 | 1/A3/706:707, 1/A3/855:861, 1/A3/871:878, 1/A3/1222:1228 | No text annotation | ||
| J4_9RHU_006 | 1/A3/883:885, 1/A3/985:987, 1/A3/1126:1127, 1/A3/1212:1217 | No text annotation | ||
| J4_9RHU_007 | 1/A3/2208:2214, 1/A3/2232:2234, 1/A3/2667:2672, 1/A3/3588:3589 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9RHU_008 | 1/A3/2249:2253, 1/A3/2277:2282, 1/A3/2381:2382, 1/A3/2620:2627 | No text annotation | ||
| J4_9RHU_009 | 1/A3/2252:2253, 1/A3/2277:2282, 1/A3/2381:2382, 1/A3/2620:2626 | No text annotation | homologous J4_8GLP_006 J4_48150.2 | |
| J4_9RHU_010 | 1/A3/2294:2299, 1/A3/2308:2312, 1/A3/2314:2319, 1/A3/2344:2351 | No text annotation | homologous J4_8GLP_007 NA | |
| J4_9RHU_011 | 1/A3/2461:2462, 1/A3/2480:2485, 1/A3/2535:2541, 1/A3/2561:2562 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9RHU_012 | 1/A3/3366:3370, 1/A3/3382:3386, 1/A3/3422:3426, 1/A3/3553:3558 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9RHU_013 | 1/A3/3428:3430, 1/A3/3484:3485, 1/A3/3503:3512, 1/A3/3546:3551 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9RHU_014 | 1/A3/3977:3981, 1/A3/4035:4037, 1/A3/4064:4065, 1/A3/4074:4076 | No text annotation | ||
| J4_9RHU_015 | 1/A3/3977:3981, 1/A3/4035:4039, 1/A3/4063:4065, 1/A3/4074:4076 | No text annotation | homologous J4_8GLP_012 J4_59590.4 | |
| J4_9RHU_016 | 1/A3/4333:4336, 1/A3/4366:4367, 1/A3/4422:4424, 1/A3/4458:4461 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9RHU_017 | 1/J1/7:10, 1/J1/25:27, 1/J1/43:49, 1/J1/65:66 | tRNA junction | homologous J4_7EQJ_002 J4_95067.3 | |
| J4_9RHU_018 | 1/K1/7:10, 1/K1/25:26, 1/K1/44:49, 1/K1/65:66 | tRNA junction | homologous J4_4QEI_001 J4_35610.2 | |
| J5_9RHU_001 | 1/A1/30:34, 1/A1/522:528, 1/A1/559:564, 1/A1/593:596, 1/A1/642:645 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9RHU_002 | 1/A1/30:34, 1/A1/522:528, 1/A1/559:566, 1/A1/586:596, 1/A1/642:645 | No text annotation | ||
| J5_9RHU_003 | 1/A1/53:56, 1/A1/89:96, 1/A1/435:437, 1/A1/458:460, 1/A1/471:475 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J5_9RHU_004 | 1/A1/123:129, 1/A1/183:185, 1/A1/214:215, 1/A1/311:313, 1/A1/338:342 | No text annotation | ||
| J5_9RHU_005 | 1/A3/19:21, 1/C3/35:42, 1/C3/101:106, 1/C3/113:114, 1/C3/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.4 | |
| J5_9RHU_006 | 1/A3/1279:1284, 1/A3/1471:1474, 1/A3/1613:1616, 1/A3/2131:2133, 1/A3/2188:2194 | No text annotation | homologous J5_8GLP_002 J5_08384.4 | |
| J5_9RHU_007 | 1/A3/2698:2706, 1/A3/2730:2731, 1/A3/3345:3346, 1/A3/3350:3358, 1/A3/3567:3569 | No text annotation | homologous J5_8GLP_003 J5_99177.4 | |
| J5_9RHU_008 | 1/A3/3635:3642, 1/A3/4138:4146, 1/A3/4190:4199, 1/A3/4274:4280, 1/A3/4298:4303 | No text annotation | ||
| J5_9RHU_009 | 1/A3/3652:3655, 1/A3/3934:3937, 1/A3/3950:3951, 1/A3/3973:3974, 1/A3/4121:4127 | No text annotation | homologous J5_9H3G_006 J5_96125.4 | |
| J6_9RHU_001 | 1/A3/21:26, 1/A3/57:67, 1/A3/74:78, 1/A3/105:109, 1/A3/332:339, 1/C3/33:35 | No text annotation | ||
| J6_9RHU_002 | 1/A3/1296:1299, 1/A3/1328:1332, 1/A3/1339:1343, 1/A3/1373:1376, 1/A3/1419:1421, 1/A3/1454:1459 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9RHU_003 | 1/A3/3652:3655, 1/A3/3934:3937, 1/A3/3950:3951, 1/A3/3973:3976, 1/A3/4077:4088, 1/A3/4116:4127 | No text annotation | ||
| J7_9RHU_001 | 1/A3/1621:1626, 1/A3/1639:1640, 1/A3/1791:1794, 1/A3/1818:1823, 1/A3/1834:1838, 1/A3/2016:2017, 1/A3/2121:2126 | No text annotation |
Problematic loops
No problematic loops
Coloring options: