HL_9RHU_016

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

9RHU|1|A1|G|837, 9RHU|1|A1|A|838

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_016 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1948

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9RHU|1|A1|C|835
9RHU|1|A1|C|836
9RHU|1|A1|G|837
9RHU|1|A1|A|838
9RHU|1|A1|G|839

Current chains

Chain A1

18S rRNA

Nearby chains

Chain j1

40S ribosomal protein S24