HL_9RHU_029

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_029 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.1258

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9RHU|1|A1|C|1461
9RHU|1|A1|G|1462
9RHU|1|A1|U|1463
9RHU|1|A1|U|1464
9RHU|1|A1|C|1465
9RHU|1|A1|A|1466
9RHU|1|A1|G|1467

Current chains

Chain A1

18S rRNA

Nearby chains

Chain G1

Small ribosomal subunit protein RACK1

Chain c1

Small ribosomal subunit protein eS17