HL_9RHU_047

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

9RHU|1|A3|A|866, 9RHU|1|A3|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_047 not in the Motif Atlas

Geometric match to HL_12CJ_003

Geometric discrepancy: 0.3794

The information below is about HL_12CJ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9RHU|1|A3|C|862
9RHU|1|A3|G|863
9RHU|1|A3|A|864
9RHU|1|A3|G|865
9RHU|1|A3|A|866
9RHU|1|A3|C|867
9RHU|1|A3|C|868
9RHU|1|A3|U|869
9RHU|1|A3|G|870

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A2

60S ribosomal protein L6

Chain B2

60S ribosomal protein L7