HL_9RHU_054

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_054 not in the Motif Atlas

Homologous match to HL_8GLP_022

Geometric discrepancy: 0.0541

The information below is about HL_8GLP_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RHU|1|A3|G|1516
9RHU|1|A3|G|1517
9RHU|1|A3|A|1518
9RHU|1|A3|A|1519
9RHU|1|A3|A|1520
9RHU|1|A3|C|1521

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain W1

Small ribosomal subunit protein uS17

Chain Y1

Small ribosomal subunit protein uS15

Chain k2

60S ribosomal protein L37a