HL_9RHU_065

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_065 not in the Motif Atlas

Homologous match to HL_8GLP_032

Geometric discrepancy: 0.036

The information below is about HL_8GLP_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RHU|1|A3|C|2160
9RHU|1|A3|G|2161
9RHU|1|A3|C|2162
9RHU|1|A3|G|2163
9RHU|1|A3|G|2164
9RHU|1|A3|G|2165

Current chains

Chain A3

28S rRNA

Nearby chains

Chain a2

Ribosomal protein L32

Chain l2

[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B