HL_9RHU_080

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

9RHU|1|A3|U|2717

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_080 not in the Motif Atlas

Homologous match to HL_9AXU_040

Geometric discrepancy: 0.0687

The information below is about HL_9AXU_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9RHU|1|A3|C|2715
9RHU|1|A3|U|2716
9RHU|1|A3|U|2717
9RHU|1|A3|C|2718
9RHU|1|A3|OMG|2719
9RHU|1|A3|G|2720

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain k2

60S ribosomal protein L37a

Chain l1

Small ribosomal subunit protein eS32