HL_9RHU_094

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_094 not in the Motif Atlas

Homologous match to HL_8GLP_064

Geometric discrepancy: 0.0385

The information below is about HL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RHU|1|A3|U|4067
9RHU|1|A3|G|4068
9RHU|1|A3|A|4069
9RHU|1|A3|A|4070
9RHU|1|A3|A|4071
9RHU|1|A3|G|4072

Current chains

Chain A3

28S rRNA

Nearby chains

Chain G3

Large ribosomal subunit protein uL18

Chain P2

60S ribosomal protein L21

Chain j2

Ribosomal protein L36a