HL_9RHU_096

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_096 not in the Motif Atlas

Homologous match to HL_9H3G_062

Geometric discrepancy: 0.128

The information below is about HL_9H3G_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9RHU|1|A3|C|4163
9RHU|1|A3|G|4164
9RHU|1|A3|U|4165
9RHU|1|A3|PSU|4166
9RHU|1|A3|C|4167
9RHU|1|A3|A|4168
9RHU|1|A3|PSU|4169
9RHU|1|A3|A|4170
9RHU|1|A3|G|4171

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L10

Chain i2

Ubiquitin-ribosomal protein eL40 fusion protein

Chain p2

Eukaryotic peptide chain release factor subunit 1