HL_9RHU_102

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9RHU|1|A3|G|4440, 9RHU|1|A3|C|4444

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|4434
9RHU|1|A3|PSU|4435
9RHU|1|A3|G|4436
9RHU|1|A3|A|4437
9RHU|1|A3|A|4438
9RHU|1|A3|C|4439
9RHU|1|A3|G|4440
9RHU|1|A3|C|4441
9RHU|1|A3|C|4442
9RHU|1|A3|U|4443
9RHU|1|A3|C|4444
9RHU|1|A3|U|4445
9RHU|1|A3|A|4446
9RHU|1|A3|A|4447
9RHU|1|A3|G|4448

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L9

Chain K2

Large ribosomal subunit protein uL13

Chain i2

Ubiquitin-ribosomal protein eL40 fusion protein