HL_9RHU_113

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

9RHU|1|J1|C|16, 9RHU|1|J1|U|18, 9RHU|1|J1|G|19, 9RHU|1|J1|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_113 not in the Motif Atlas

Homologous match to HL_7MRL_001

Geometric discrepancy: 0.1372

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9RHU|1|J1|C|13
9RHU|1|J1|A|14
9RHU|1|J1|G|15
9RHU|1|J1|C|16
9RHU|1|J1|U|18
9RHU|1|J1|G|19
9RHU|1|J1|U|20
9RHU|1|J1|A|21
9RHU|1|J1|G|22

Current chains

Chain J1

E-site tRNA-Pro

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain M1

40S ribosomal protein S3a

Chain o2

Ribosomal protein uL1