HL_9RHU_117
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- A(OMU)U(OMC)CCAU(OMU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RHU_117 not in the Motif Atlas
- Homologous match to HL_9MTS_102
- Geometric discrepancy: 0.0961
- The information below is about HL_9MTS_102
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9RHU|1|K1|A|31
9RHU|1|K1|OMU|32
9RHU|1|K1|U|33
9RHU|1|K1|OMC|34
9RHU|1|K1|C|35
9RHU|1|K1|C|36
9RHU|1|K1|A|37
9RHU|1|K1|U|38
9RHU|1|K1|OMU|39
Current chains
- Chain K1
- P-site tRNA-Gly
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain I1
- mRNA containing F2A sequence
- Chain J1
- Transfer RNA; tRNA
- Chain b1
- Small ribosomal subunit protein uS9
- Chain p2
- Eukaryotic peptide chain release factor subunit 1
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