HL_9RHU_118

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(5MU)UCG(1MA)UUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_118 not in the Motif Atlas

Homologous match to HL_5WWT_002

Geometric discrepancy: 0.1009

The information below is about HL_5WWT_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9RHU|1|K1|G|53
9RHU|1|K1|5MU|54
9RHU|1|K1|U|55
9RHU|1|K1|C|56
9RHU|1|K1|G|57
9RHU|1|K1|1MA|58
9RHU|1|K1|U|59
9RHU|1|K1|U|60
9RHU|1|K1|C|61

Current chains

Chain K1

P-site tRNA-Gly

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain F2

60S ribosomal protein L11

Chain j2

Ribosomal protein L36a