HL_9RJA_038

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9RJA|1|a|A|196, 9RJA|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_038 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0821

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9RJA|1|a|G|194
9RJA|1|a|A|195
9RJA|1|a|A|196
9RJA|1|a|A|197
9RJA|1|a|C|198
9RJA|1|a|A|199
9RJA|1|a|U|200
9RJA|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Manikomycin

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28