HL_9RJA_045

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9RJA|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_045 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1103

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9RJA|1|a|G|410
9RJA|1|a|G|411
9RJA|1|a|A|412
9RJA|1|a|C|413
9RJA|1|a|C|414
9RJA|1|a|A|415
9RJA|1|a|U|416
9RJA|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains