HL_9RJA_062

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9RJA|1|a|U|1325, 9RJA|1|a|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_062 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1777

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9RJA|1|a|G|1324
9RJA|1|a|U|1325
9RJA|1|a|U|1326
9RJA|1|a|A|1327
9RJA|1|a|A|1328
9RJA|1|a|U|1329
9RJA|1|a|C|1330

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22