HL_9RJA_065

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9RJA|1|a|A|1453, 9RJA|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_065 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0408

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9RJA|1|a|C|1451
9RJA|1|a|G|1452
9RJA|1|a|A|1453
9RJA|1|a|C|1454
9RJA|1|a|G|1455
9RJA|1|a|G|1456
9RJA|1|a|U|1457
9RJA|1|a|U|1458
9RJA|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17