HL_9RJA_088
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RJA_088 not in the Motif Atlas
- Homologous match to HL_7A0S_059
- Geometric discrepancy: 0.194
- The information below is about HL_7A0S_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.3
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9RJA|1|a|A|2471
9RJA|1|a|G|2472
9RJA|1|a|U|2473
9RJA|1|a|U|2474
9RJA|1|a|C|2475
9RJA|1|a|A|2476
9RJA|1|a|U|2477
9RJA|1|a|A|2478
9RJA|1|a|U|2479
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain Y
- Transfer RNA; tRNA
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: