HL_9RJA_089

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9RJA|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_089 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1312

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9RJA|1|a|U|2528
9RJA|1|a|G|2529
9RJA|1|a|A|2530
9RJA|1|a|A|2531
9RJA|1|a|G|2532
9RJA|1|a|U|2533
9RJA|1|a|A|2534
9RJA|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6