HL_9ROV_013

3D structure

PDB id

9ROV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

9ROV|1|A|C|1151, 9ROV|1|A|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ROV_013 not in the Motif Atlas

Geometric match to HL_5E08_001

Geometric discrepancy: 0.3944

The information below is about HL_5E08_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9ROV|1|A|C|1150
9ROV|1|A|C|1151
9ROV|1|A|A|1152
9ROV|1|A|C|1153
9ROV|1|A|A|1154
9ROV|1|A|G|1155

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain L

28S ribosomal protein S15, mitochondrial