HL_9RPF_020

3D structure

PDB id

9RPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

9RPF|1|A|C|1525, 9RPF|1|A|U|1526

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPF_020 not in the Motif Atlas

Geometric match to HL_9F37_001

Geometric discrepancy: 0.3

The information below is about HL_9F37_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21043.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

9RPF|1|A|U|1522
9RPF|1|A|A|1523
9RPF|1|A|A|1524
9RPF|1|A|C|1525
9RPF|1|A|U|1526
9RPF|1|A|A|1527
9RPF|1|A|A|1528

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain V

28S ribosomal protein S27, mitochondrial