HL_9RPV_005
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RPV_005 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1161
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9RPV|1|B5|G|32
9RPV|1|B5|OMC|33
9RPV|1|B5|U|34
9RPV|1|B5|C|35
9RPV|1|B5|A|36
9RPV|1|B5|U|37
9RPV|1|B5|A|38
9RPV|1|B5|A|39
9RPV|1|B5|C|40
Current chains
- Chain B5
- P-site tRNA of the stalled 80S
Nearby chains
- Chain A5
- mRNA of the stalled 80S
- Chain RP
- 40S ribosomal protein S15
- Chain RQ
- 40S ribosomal protein S16
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
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