HL_9RPV_007
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RPV_007 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3643
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9RPV|1|D4|G|30
9RPV|1|D4|A|31
9RPV|1|D4|U|32
9RPV|1|D4|U|33
9RPV|1|D4|G|34
9RPV|1|D4|A|35
9RPV|1|D4|A|36
9RPV|1|D4|A|37
9RPV|1|D4|A|38
9RPV|1|D4|U|39
9RPV|1|D4|C|40
Current chains
- Chain D4
- A/P tRNA on the collided 80S
Nearby chains
- Chain A4
- mRNA of the collided 80S
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
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