HL_9RPV_009
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GUAACGGCUAUC
- Length
- 12 nucleotides
- Bulged bases
- 9RPV|1|E5|C|16, 9RPV|1|E5|G|17, 9RPV|1|E5|G|18, 9RPV|1|E5|C|19, 9RPV|1|E5|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RPV_009 not in the Motif Atlas
- Geometric match to HL_1F7U_001
- Geometric discrepancy: 0.2484
- The information below is about HL_1F7U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55043.2
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
9RPV|1|E5|G|12
9RPV|1|E5|U|13
9RPV|1|E5|A|14
9RPV|1|E5|A|15
9RPV|1|E5|C|16
9RPV|1|E5|G|17
9RPV|1|E5|G|18
9RPV|1|E5|C|19
9RPV|1|E5|U|20
9RPV|1|E5|A|21
9RPV|1|E5|U|22
9RPV|1|E5|C|23
Current chains
- Chain E5
- E-site tRNA of the stalled 80S
Nearby chains
- Chain Ms
- 60S ribosomal protein L10a
- Chain RB
- 40S ribosomal protein S3a
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