HL_9RPV_060

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9RPV|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_060 not in the Motif Atlas

Homologous match to HL_9H3G_055

Geometric discrepancy: 0.0801

The information below is about HL_9H3G_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9RPV|1|L5|C|4193
9RPV|1|L5|U|4194
9RPV|1|L5|G|4195
9RPV|1|L5|G|4196
9RPV|1|L5|G|4197
9RPV|1|L5|G|4198
9RPV|1|L5|C|4199
9RPV|1|L5|G|4200
9RPV|1|L5|G|4201

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain LI

Ribosomal protein uL16-like

Chain Lb

60S ribosomal protein L29