HL_9RPV_094

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9RPV|1|M5|U|1179, 9RPV|1|M5|C|1180, 9RPV|1|M5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_094 not in the Motif Atlas

Homologous match to HL_8GLP_014

Geometric discrepancy: 0.1192

The information below is about HL_8GLP_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9RPV|1|M5|G|1178
9RPV|1|M5|U|1179
9RPV|1|M5|C|1180
9RPV|1|M5|C|1181
9RPV|1|M5|C|1182
9RPV|1|M5|C|1183

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M7

5S ribosomal RNA; 5S rRNA

Chain MD

60S ribosomal protein L5

Chain MI

60S ribosomal protein L10