HL_9RPV_100

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|1436
9RPV|1|M5|C|1437
9RPV|1|M5|U|1438
9RPV|1|M5|C|1439
9RPV|1|M5|U|1440
9RPV|1|M5|C|1441
9RPV|1|M5|C|1442
9RPV|1|M5|A|1443
9RPV|1|M5|G|1444
9RPV|1|M5|U|1445
9RPV|1|M5|C|1446
9RPV|1|M5|C|1447
9RPV|1|M5|G|1448

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MF

Large ribosomal subunit protein uL30

Chain MQ

60S ribosomal protein L18

Chain Mb

Large ribosomal subunit protein eL29