HL_9RPV_105

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9RPV|1|M5|C|1676, 9RPV|1|M5|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_105 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.1448

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9RPV|1|M5|C|1675
9RPV|1|M5|C|1676
9RPV|1|M5|PSU|1677
9RPV|1|M5|C|1678
9RPV|1|M5|A|1679
9RPV|1|M5|G|1680

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain Ma

Large ribosomal subunit protein uL15

Chain Mb

Large ribosomal subunit protein eL29

Chain Mo

Large ribosomal subunit protein eL42