HL_9RPV_125

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

9RPV|1|M5|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_125 not in the Motif Atlas

Homologous match to HL_8GLP_046

Geometric discrepancy: 0.0972

The information below is about HL_8GLP_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RPV|1|M5|U|2810
9RPV|1|M5|G|2811
9RPV|1|M5|A|2812
9RPV|1|M5|A|2813
9RPV|1|M5|C|2814
9RPV|1|M5|A2M|2815
9RPV|1|M5|G|2816

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MR

60S ribosomal protein L19