HL_9RPV_131

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9RPV|1|M5|A2M|3760

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|G|3757
9RPV|1|M5|PSU|3758
9RPV|1|M5|A|3759
9RPV|1|M5|A2M|3760
9RPV|1|M5|C|3761
9RPV|1|M5|PSU|3762
9RPV|1|M5|A|3763
9RPV|1|M5|PSU|3764
9RPV|1|M5|G|3765
9RPV|1|M5|A|3766
9RPV|1|M5|C|3767

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain B5

Transfer RNA; tRNA

Chain S3

Small subunit ribosomal RNA; SSU rRNA