HL_9RPV_140

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_140 not in the Motif Atlas

Homologous match to HL_8GLP_063

Geometric discrepancy: 0.0732

The information below is about HL_8GLP_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9RPV|1|M5|U|4301
9RPV|1|M5|U|4302
9RPV|1|M5|C|4303
9RPV|1|M5|A|4304
9RPV|1|M5|G|4305
9RPV|1|M5|OMU|4306
9RPV|1|M5|A|4307
9RPV|1|M5|C|4308
9RPV|1|M5|G|4309

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MQ

60S ribosomal protein L18

Chain MT

60S ribosomal protein L21

Chain Ma

Large ribosomal subunit protein uL15

Chain Mo

Large ribosomal subunit protein eL42