HL_9RPV_142

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

U(PSU)UGGGUUU(PSU)A

Length

11 nucleotides

Bulged bases

9RPV|1|M5|U|4354

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|U|4352
9RPV|1|M5|PSU|4353
9RPV|1|M5|U|4354
9RPV|1|M5|G|4355
9RPV|1|M5|G|4356
9RPV|1|M5|G|4357
9RPV|1|M5|U|4358
9RPV|1|M5|U|4359
9RPV|1|M5|U|4360
9RPV|1|M5|PSU|4361
9RPV|1|M5|A|4362

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ML

Large ribosomal subunit protein eL13

Chain Ma

Large ribosomal subunit protein uL15

Chain Mi

60S ribosomal protein L36

Chain Mo

Large ribosomal subunit protein eL42

Chain Ms

60S ribosomal protein L10a