HL_9RPV_180

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9RPV|1|S2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|S2|G|1245
9RPV|1|S2|A|1246
9RPV|1|S2|C|1247
9RPV|1|S2|U|1248
9RPV|1|S2|C|1249
9RPV|1|S2|A|1250
9RPV|1|S2|A|1251
9RPV|1|S2|C|1252
9RPV|1|S2|A|1253
9RPV|1|S2|C|1254

Current chains

Chain S2

18S rRNA of the collided 80S

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain D4

Transfer RNA; tRNA

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29