HL_9RPV_193

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9RPV|1|S3|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_193 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2361

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9RPV|1|S3|G|288
9RPV|1|S3|G|289
9RPV|1|S3|U|290
9RPV|1|S3|G|291
9RPV|1|S3|A|292
9RPV|1|S3|C|293
9RPV|1|S3|U|294
9RPV|1|S3|C|295

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RE

Small ribosomal subunit protein eS4, X isoform

Chain RG

40S ribosomal protein S6

Chain RL

40S ribosomal protein S11