HL_9RTU_096

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9RTU|1|a|C|1136, 9RTU|1|a|C|1137, 9RTU|1|a|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RTU_096 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2431

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9RTU|1|a|G|1134
9RTU|1|a|U|1135
9RTU|1|a|C|1136
9RTU|1|a|C|1137
9RTU|1|a|G|1138
9RTU|1|a|G|1139
9RTU|1|a|C|1140

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9