HL_9RTU_105

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

9RTU|1|w|C|17, 9RTU|1|w|G|18, 9RTU|1|w|G|19, 9RTU|1|w|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RTU_105 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3152

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

9RTU|1|w|C|13
9RTU|1|w|A|14
9RTU|1|w|G|15
9RTU|1|w|U|16
9RTU|1|w|C|17
9RTU|1|w|G|18
9RTU|1|w|G|19
9RTU|1|w|U|20
9RTU|1|w|A|21
9RTU|1|w|G|22

Current chains

Chain w

A/P-site tRNA(Phe)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA