HL_9RTV_053

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9RTV|1|A|A|2268, 9RTV|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RTV_053 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1175

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9RTV|1|A|C|2264
9RTV|1|A|U|2265
9RTV|1|A|A|2266
9RTV|1|A|A|2267
9RTV|1|A|A|2268
9RTV|1|A|G|2269
9RTV|1|A|A|2270
9RTV|1|A|G|2271
9RTV|1|A|U|2272
9RTV|1|A|A|2273
9RTV|1|A|A|2274
9RTV|1|A|C|2275
9RTV|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

Large ribosomal subunit protein bL27