HL_9RU8_053

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU8_053 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.1645

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9RU8|1|L5|C|4417
9RU8|1|L5|G|4418
9RU8|1|L5|U|4419
9RU8|1|L5|PSU|4420
9RU8|1|L5|C|4421
9RU8|1|L5|A|4422
9RU8|1|L5|PSU|4423
9RU8|1|L5|A|4424
9RU8|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40