HL_9RU9_001
3D structure
- PDB id
- 9RU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CAGCGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 9RU9|1|Et|G|18, 9RU9|1|Et|G|19, 9RU9|1|Et|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RU9_001 not in the Motif Atlas
- Homologous match to HL_3WQY_001
- Geometric discrepancy: 0.5618
- The information below is about HL_3WQY_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_57684.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9RU9|1|Et|C|14
9RU9|1|Et|A|15
9RU9|1|Et|G|16
9RU9|1|Et|C|17
9RU9|1|Et|G|18
9RU9|1|Et|G|19
9RU9|1|Et|A|20
9RU9|1|Et|A|21
9RU9|1|Et|G|22
Current chains
- Chain Et
- E site tRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S3a
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