HL_9RU9_069

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9RU9|1|L5|G|4694, 9RU9|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|C|4688
9RU9|1|L5|PSU|4689
9RU9|1|L5|G|4690
9RU9|1|L5|A|4691
9RU9|1|L5|A|4692
9RU9|1|L5|C|4693
9RU9|1|L5|G|4694
9RU9|1|L5|C|4695
9RU9|1|L5|C|4696
9RU9|1|L5|U|4697
9RU9|1|L5|C|4698
9RU9|1|L5|U|4699
9RU9|1|L5|A|4700
9RU9|1|L5|A|4701
9RU9|1|L5|G|4702

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein