HL_9RU9_079
3D structure
- PDB id
- 9RU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CAGCCCGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9RU9|1|Pt|G|19, 9RU9|1|Pt|G|20, 9RU9|1|Pt|H2U|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RU9_079 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1134
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RU9|1|Pt|C|13
9RU9|1|Pt|A|14
9RU9|1|Pt|G|15
9RU9|1|Pt|C|16
9RU9|1|Pt|C|17
9RU9|1|Pt|C|18
9RU9|1|Pt|G|19
9RU9|1|Pt|G|20
9RU9|1|Pt|H2U|21
9RU9|1|Pt|A|22
9RU9|1|Pt|G|23
Current chains
- Chain Pt
- P site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- Large ribosomal subunit protein eL42
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