HL_9RUC_043

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(PSU)AAC(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9RUC|1|L5|A|3760

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|G|3757
9RUC|1|L5|PSU|3758
9RUC|1|L5|A|3759
9RUC|1|L5|A|3760
9RUC|1|L5|C|3761
9RUC|1|L5|PSU|3762
9RUC|1|L5|A|3763
9RUC|1|L5|PSU|3764
9RUC|1|L5|G|3765
9RUC|1|L5|A|3766
9RUC|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA