HL_9RUC_053

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RUC_053 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.1756

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9RUC|1|L5|C|4417
9RUC|1|L5|G|4418
9RUC|1|L5|U|4419
9RUC|1|L5|PSU|4420
9RUC|1|L5|C|4421
9RUC|1|L5|A|4422
9RUC|1|L5|PSU|4423
9RUC|1|L5|A|4424
9RUC|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein