HL_9RUC_067
3D structure
- PDB id
- 9RUC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RUC_067 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0984
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9RUC|1|Pt|G|32
9RUC|1|Pt|OMC|33
9RUC|1|Pt|U|34
9RUC|1|Pt|C|35
9RUC|1|Pt|A|36
9RUC|1|Pt|U|37
9RUC|1|Pt|A|38
9RUC|1|Pt|A|39
9RUC|1|Pt|C|40
Current chains
- Chain Pt
- P site tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain S6
- Transfer RNA; tRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SQ
- 40S ribosomal protein S16
- Chain mR
- Histone H2B mRNA
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