HL_9RVC_001
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RVC_001 not in the Motif Atlas
- Homologous match to HL_6CZR_072
- Geometric discrepancy: 0.139
- The information below is about HL_6CZR_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.4
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9RVC|1|A|U|13
9RVC|1|A|U|14
9RVC|1|A|U|15
9RVC|1|A|G|16
9RVC|1|A|A|17
9RVC|1|A|U|18
9RVC|1|A|C|19
9RVC|1|A|C|20
9RVC|1|A|U|21
9RVC|1|A|G|22
9RVC|1|A|G|23
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- spa mRNA
Coloring options: