9RVC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9RVC_001 | 1/A/13:23 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9RVC_003 | 1/A/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_9RVC_005 | 1/A/216:224 | No text annotation | geometric HL_9E6Q_025 HL_28253.1 | |
| HL_9RVC_006 | 1/A/267:275 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_9RVC_007 | 1/A/304:309 | GNRA | homologous HL_6CZR_078 NA | |
| HL_9RVC_008 | 1/A/328:341 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_9RVC_009 | 1/A/350:355 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9RVC_010 | 1/A/387:392 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9RVC_011 | 1/A/427:432 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9RVC_013 | 1/A/530:535 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_9RVC_015 | 1/A/697:706 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_9RVC_016 | 1/A/734:739 | GNRA | homologous HL_6CZR_087 NA | |
| HL_9RVC_017 | 1/A/794:804 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_9RVC_018 | 1/A/848:856 | No text annotation | ||
| HL_9RVC_019 | 1/A/872:877 | GNRA | homologous HL_6CZR_090 NA | |
| HL_9RVC_020 | 1/A/907:912 | GNRA | homologous HL_6CZR_091 NA | |
| HL_9RVC_021 | 1/A/973:982 | No text annotation | homologous HL_6CZR_092 NA | |
| HL_9RVC_022 | 1/A/1022:1027 | No text annotation | geometric HL_8B0X_062 HL_34789.6 | |
| HL_9RVC_024 | 1/A/1088:1093 | GNRA | homologous HL_6CZR_095 NA | |
| HL_9RVC_025 | 1/A/1101:1108 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_9RVC_026 | 1/A/1145:1152 | No text annotation | ||
| HL_9RVC_027 | 1/A/1176:1182 | GNRA | homologous HL_6CZR_098 NA | |
| HL_9RVC_028 | 1/A/1276:1281 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_9RVC_029 | 1/A/1325:1334 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_9RVC_030 | 1/A/1367:1377 | No text annotation | homologous HL_6CZR_101 NA | |
| HL_9RVC_032 | 1/A/1527:1532 | GNRA | homologous HL_6CZR_103 NA | |
| HL_9RVC_033 | 1/Y/13:22 | No text annotation | homologous HL_4YCO_001 HL_23048.1 | |
| HL_9RVC_034 | 1/Y/31:39 | No text annotation | homologous HL_7U2J_104 HL_81376.4 | |
| HL_9RVC_035 | 1/Y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_33597.6 | |
| HL_9RVC_036 | 1/Z/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_9RVC_037 | 1/Z/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_81376.4 | |
| HL_9RVC_038 | 1/Z/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_33597.6 | |
| HL_9RVC_039 | 1/a/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.2 | |
| HL_9RVC_040 | 1/a/87:95 | Pseudoknot geometry | geometric HL_4WF9_002 HL_00911.4 | |
| HL_9RVC_041 | 1/a/122:127 | No text annotation | homologous HL_7A0S_003 HL_82710.4 | |
| HL_9RVC_042 | 1/a/136:143 | GNRA with tandem sheared | geometric HL_5AOX_001 HL_98423.5 | |
| HL_9RVC_043 | 1/a/159:169 | No text annotation | ||
| HL_9RVC_044 | 1/a/197:204 | No text annotation | homologous HL_7A0S_006 HL_02262.1 | |
| HL_9RVC_045 | 1/a/228:233 | No text annotation | homologous HL_7A0S_007 HL_23875.1 | |
| HL_9RVC_046 | 1/a/249:255 | No text annotation | homologous HL_7A0S_008 HL_76371.4 | |
| HL_9RVC_048 | 1/a/348:355 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.5 | |
| HL_9RVC_049 | 1/a/362:366 | No text annotation | geometric HL_9H3G_010 HL_75660.10 | |
| HL_9RVC_050 | 1/a/370:378 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.6 | |
| HL_9RVC_051 | 1/a/428:438 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9RVC_052 | 1/a/456:463 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9RVC_053 | 1/a/508:513 | GNRA | homologous HL_7A0S_015 HL_34789.6 | |
| HL_9RVC_054 | 1/a/533:538 | GNRA | homologous HL_7A0S_016 HL_34789.6 | |
| HL_9RVC_055 | 1/a/587:594 | No text annotation | geometric HL_4WF9_017 HL_50318.1 | |
| HL_9RVC_056 | 1/a/609:618 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.6 | |
| HL_9RVC_057 | 1/a/655:661 | No text annotation | ||
| HL_9RVC_058 | 1/a/674:679 | GNRA | homologous HL_7A0S_020 HL_34789.6 | |
| HL_9RVC_059 | 1/a/686:692 | GNRA | geometric HL_9DFE_019 HL_34789.6 | |
| HL_9RVC_060 | 1/a/757:764 | No text annotation | geometric HL_8B0X_052 HL_98423.5 | |
| HL_9RVC_061 | 1/a/789:798 | No text annotation | homologous HL_7A0S_022 HL_50204.3 | |
| HL_9RVC_062 | 1/a/824:830 | No text annotation | geometric HL_8B0X_054 HL_79773.1 | |
| HL_9RVC_063 | 1/a/871:876 | No text annotation | homologous HL_7A0S_024 HL_27530.3 | |
| HL_9RVC_065 | 1/a/999:1006 | GNRA | homologous HL_7A0S_026 HL_34789.6 | |
| HL_9RVC_066 | 1/a/1022:1029 | No text annotation | homologous HL_7A0S_027 HL_47171.3 | |
| HL_9RVC_068 | 1/a/1214:1218 | No text annotation | ||
| HL_9RVC_069 | 1/a/1260:1265 | GNRA | homologous HL_7A0S_031 HL_34789.6 | |
| HL_9RVC_070 | 1/a/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.6 | |
| HL_9RVC_071 | 1/a/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.2 | |
| HL_9RVC_072 | 1/a/1400:1405 | GNRA variation | homologous HL_7A0S_034 HL_34789.6 | |
| HL_9RVC_073 | 1/a/1426:1435 | No text annotation | homologous HL_7A0S_035 HL_77449.3 | |
| HL_9RVC_074 | 1/a/1490:1508 | No text annotation | ||
| HL_9RVC_075 | 1/a/1535:1541 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9RVC_076 | 1/a/1572:1594 | No text annotation | ||
| HL_9RVC_077 | 1/a/1612:1615 | Mini UNCG | homologous HL_7A0S_039 HL_90436.5 | |
| HL_9RVC_078 | 1/a/1656:1663 | No text annotation | homologous HL_7A0S_040 HL_28592.4 | |
| HL_9RVC_079 | 1/a/1673:1681 | GNRA with extra cWW | geometric HL_4WF9_039 HL_87268.4 | |
| HL_9RVC_080 | 1/a/1735:1740 | UNCG | homologous HL_7A0S_042 HL_61337.6 | |
| HL_9RVC_081 | 1/a/1762:1767 | GNRA | geometric HL_7A0S_016 HL_34789.6 | |
| HL_9RVC_082 | 1/a/1779:1783 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9RVC_083 | 1/a/1804:1814 | No text annotation | geometric HL_8B0X_073 HL_87681.3 | |
| HL_9RVC_084 | 1/a/1833:1838 | GNRA | homologous HL_7A0S_046 HL_34789.6 | |
| HL_9RVC_085 | 1/a/1895:1900 | No text annotation | ||
| HL_9RVC_086 | 1/a/1937:1947 | No text annotation | geometric HL_9H3G_052 HL_82185.3 | |
| HL_9RVC_087 | 1/a/1976:1984 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_9RVC_088 | 1/a/2054:2063 | No text annotation | homologous HL_7A0S_049 HL_78372.3 | |
| HL_9RVC_090 | 1/a/2236:2242 | No text annotation | geometric HL_4WF9_048 HL_33632.1 | |
| HL_9RVC_091 | 1/a/2275:2283 | LSU P loop | homologous HL_7A0S_052 HL_11974.4 | |
| HL_9RVC_092 | 1/a/2291:2303 | No text annotation | homologous HL_7A0S_053 HL_02042.3 | |
| HL_9RVC_093 | 1/a/2331:2339 | No text annotation | ||
| HL_9RVC_094 | 1/a/2351:2358 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.4 | |
| HL_9RVC_095 | 1/a/2382:2389 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.4 | |
| HL_9RVC_096 | 1/a/2401:2406 | GNRA | homologous HL_7A0S_057 HL_34789.6 | |
| HL_9RVC_097 | 1/a/2431:2440 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_9RVC_098 | 1/a/2498:2506 | No text annotation | homologous HL_7A0S_059 HL_52011.3 | |
| HL_9RVC_099 | 1/a/2555:2562 | GNRA variation | homologous HL_7A0S_060 HL_02262.1 | |
| HL_9RVC_100 | 1/a/2578:2584 | LSU A loop | homologous HL_7A0S_061 HL_02262.1 | |
| HL_9RVC_101 | 1/a/2621:2626 | GNRA | homologous HL_7A0S_062 HL_34789.6 | |
| HL_9RVC_102 | 1/a/2685:2690 | GNRA | homologous HL_7A0S_063 HL_34789.6 | |
| HL_9RVC_103 | 1/a/2728:2733 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.4 | |
| HL_9RVC_104 | 1/a/2772:2786 | No text annotation | homologous HL_7A0S_065 HL_53269.4 | |
| HL_9RVC_105 | 1/a/2819:2824 | No text annotation | ||
| HL_9RVC_106 | 1/a/2839:2847 | No text annotation | homologous HL_7A0S_067 HL_37889.3 | |
| HL_9RVC_107 | 1/a/2876:2881 | GNRA | homologous HL_7A0S_068 HL_34789.6 | |
| HL_9RVC_108 | 1/b/32:46 | No text annotation | geometric HL_9E6Q_068 HL_97756.4 | |
| HL_9RVC_109 | 1/b/36:42 | No text annotation | homologous HL_4V9F_071 HL_59381.4 | |
| HL_9RVC_110 | 1/b/79:92 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9RVC_002 | No text annotation | ||
| HL_9RVC_004 | No text annotation | ||
| HL_9RVC_012 | No text annotation | ||
| HL_9RVC_014 | No text annotation | ||
| HL_9RVC_023 | No text annotation | ||
| HL_9RVC_031 | No text annotation | ||
| HL_9RVC_047 | No text annotation | ||
| HL_9RVC_064 | No text annotation | ||
| HL_9RVC_067 | No text annotation | ||
| HL_9RVC_089 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9RVC_001 | 1/A/31:33, 1/A/560:561 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_9RVC_002 | 1/A/45:46, 1/A/404:406 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9RVC_003 | 1/A/48:53, 1/A/367:369 | No text annotation | geometric IL_8B0X_003 IL_32983.3 | |
| IL_9RVC_004 | 1/A/55:57, 1/A/364:365 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9RVC_005 | 1/A/64:67, 1/A/102:103 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_9RVC_006 | 1/A/68:71, 1/A/98:101 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.4 | |
| IL_9RVC_007 | 1/A/128:131, 1/A/239:240 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_9RVC_008 | 1/A/132:136, 1/A/235:238 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_9RVC_009 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_9RVC_012 | 1/A/250:255, 1/A/285:292 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_9RVC_013 | 1/A/257:260, 1/A/282:283 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9RVC_014 | 1/A/300:301, 1/A/312:316 | C-loop | homologous IL_6CZR_125 NA | |
| IL_9RVC_015 | 1/A/375:377, 1/A/400:401 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9RVC_016 | 1/A/379:383, 1/A/397:398 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9RVC_017 | 1/A/383:384, 1/A/395:397 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9RVC_018 | 1/A/417:424, 1/A/435:441 | No text annotation | homologous IL_6CZR_359 NA | |
| IL_9RVC_019 | 1/A/452:458, 1/A/491:498 | No text annotation | ||
| IL_9RVC_020 | 1/A/458:464, 1/A/485:491 | No text annotation | ||
| IL_9RVC_021 | 1/A/512:519, 1/A/548:549 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_9RVC_022 | 1/A/519:522, 1/A/545:548 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.4 | |
| IL_9RVC_023 | 1/A/522:529, 1/A/536:545 | No text annotation | ||
| IL_9RVC_024 | 1/A/577:583, 1/A/890:891 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9RVC_025 | 1/A/588:592, 1/A/765:769 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_9RVC_027 | 1/A/605:606, 1/A/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_9RVC_029 | 1/A/662:664, 1/A/758:762 | No text annotation | ||
| IL_9RVC_030 | 1/A/664:666, 1/A/755:758 | No text annotation | geometric IL_8GLP_187 IL_30722.1 | |
| IL_9RVC_031 | 1/A/670:674, 1/A/748:751 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_9RVC_032 | 1/A/681:685, 1/A/721:725 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_9RVC_033 | 1/A/692:696, 1/A/707:714 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9RVC_034 | 1/A/782:787, 1/A/811:813 | No text annotation | geometric IL_8GLP_241 IL_31690.1 | |
| IL_9RVC_035 | 1/A/787:791, 1/A/807:811 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_9RVC_036 | 1/A/897:904, 1/A/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_9RVC_037 | 1/A/932:933, 1/A/1404:1406 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9RVC_038 | 1/A/935:937, 1/A/1401:1402 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_9RVC_039 | 1/A/943:945, 1/A/1391:1395 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_9RVC_040 | 1/A/963:964, 1/A/1237:1239 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9RVC_042 | 1/A/1060:1062, 1/A/1219:1220 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_9RVC_043 | 1/A/1064:1068, 1/A/1215:1217 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9RVC_044 | 1/A/1069:1070, 1/A/1210:1214 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_9RVC_045 | 1/A/1072:1073, 1/A/1206:1208 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_9RVC_046 | 1/A/1073:1075, 1/A/1204:1206 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_9RVC_047 | 1/A/1136:1139, 1/A/1156:1160 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_9RVC_048 | 1/A/1141:1144, 1/A/1153:1154 | No text annotation | geometric IL_8B0X_051 IL_87975.2 | |
| IL_9RVC_049 | 1/A/1169:1172, 1/A/1186:1192 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9RVC_050 | 1/A/1258:1264, 1/A/1294:1301 | No text annotation | ||
| IL_9RVC_051 | 1/A/1265:1269, 1/A/1288:1293 | No text annotation | ||
| IL_9RVC_052 | 1/A/1270:1274, 1/A/1283:1287 | No text annotation | geometric IL_8B0X_055 IL_87767.4 | |
| IL_9RVC_053 | 1/A/1314:1319, 1/A/1340:1345 | No text annotation | homologous IL_6CZR_164 NA | |
| IL_9RVC_054 | 1/A/1410:1412, 1/A/1513:1516 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_9RVC_055 | 1/A/1412:1415, 1/A/1509:1513 | No text annotation | homologous IL_6CZR_368 NA | |
| IL_9RVC_056 | 1/A/1416:1418, 1/A/1506:1508 | Isolated non-canonical cWW pair | geometric IL_4LFB_069 IL_01003.6 | |
| IL_9RVC_057 | 1/A/1418:1420, 1/A/1503:1506 | No text annotation | geometric IL_9H3G_236 IL_29925.3 | |
| IL_9RVC_058 | 1/A/1423:1425, 1/A/1498:1500 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_9RVC_059 | 1/A/1427:1430, 1/A/1493:1496 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_9RVC_060 | 1/A/1435:1438, 1/A/1485:1488 | Tandem non-canonical cWW pairs with external base triple | geometric IL_9H3G_114 IL_15225.4 | |
| IL_9RVC_061 | 1/A/1441:1446, 1/A/1478:1482 | No text annotation | geometric IL_8B0X_062 IL_47352.3 | |
| IL_9RVC_062 | 1/A/1446:1448, 1/A/1476:1478 | Isolated non-canonical cWW pair | homologous IL_6CZR_171 NA | |
| IL_9RVC_063 | 1/A/1451:1454, 1/A/1471:1473 | No text annotation | geometric IL_9DFE_082 IL_87316.4 | |
| IL_9RVC_064 | 1/A/1456:1459, 1/A/1467:1469 | No text annotation | geometric IL_4WF9_107 IL_05502.2 | |
| IL_9RVC_065 | 1/A/1544:1546, 1/X/8:9 | No text annotation | geometric IL_9H3G_118 IL_46637.4 | |
| IL_9RVC_067 | 1/a/24:30, 1/a/555:561 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.3 | |
| IL_9RVC_068 | 1/a/36:37, 1/a/488:490 | Single bulged A | homologous IL_7A0S_002 IL_14190.4 | |
| IL_9RVC_069 | 1/a/43:44, 1/a/480:482 | Minor groove platform | homologous IL_7A0S_003 IL_98469.1 | |
| IL_9RVC_070 | 1/a/56:76, 1/a/109:113 | No text annotation | ||
| IL_9RVC_071 | 1/a/81:85, 1/a/97:104 | Kink-turn | geometric IL_4WF9_004 IL_71972.2 | |
| IL_9RVC_072 | 1/a/152:153, 1/a/175:177 | Single bulged A | geometric IL_4WF9_006 IL_14190.4 | |
| IL_9RVC_073 | 1/a/186:187, 1/a/215:217 | Single stack bend | homologous IL_7A0S_005 IL_15011.5 | |
| IL_9RVC_074 | 1/a/190:197, 1/a/204:212 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.3 | |
| IL_9RVC_075 | 1/a/241:248, 1/a/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_62167.5 | |
| IL_9RVC_077 | 1/a/305:306, 1/a/409:412 | No text annotation | geometric IL_8B0X_135 IL_73108.4 | |
| IL_9RVC_078 | 1/a/310:330, 1/a/396:405 | No text annotation | ||
| IL_9RVC_079 | 1/a/336:338, 1/a/386:390 | No text annotation | geometric IL_8B0X_074 IL_76658.1 | |
| IL_9RVC_080 | 1/a/527:530, 1/a/541:554 | No text annotation | geometric IL_8B0X_075 IL_44923.3 | |
| IL_9RVC_081 | 1/a/581:584, 1/a/597:600 | Double sheared | geometric IL_4WF9_016 IL_58355.4 | |
| IL_9RVC_082 | 1/a/607:609, 1/a/618:620 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_01334.1 | |
| IL_9RVC_083 | 1/a/638:640, 1/a/705:707 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_01334.1 | |
| IL_9RVC_084 | 1/a/649:653, 1/a/663:667 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9RVC_085 | 1/a/717:719, 1/a/851:853 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.6 | |
| IL_9RVC_086 | 1/a/719:723, 1/a/844:851 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.3 | |
| IL_9RVC_087 | 1/a/742:743, 1/a/808:810 | Single bulged A | homologous IL_7A0S_016 IL_14190.4 | |
| IL_9RVC_088 | 1/a/747:748, 1/a/773:775 | Single bulged G | homologous IL_7A0S_017 IL_28408.4 | |
| IL_9RVC_089 | 1/a/748:752, 1/a/769:773 | No text annotation | geometric IL_8B0X_083 IL_15190.4 | |
| IL_9RVC_090 | 1/a/783:785, 1/a/802:803 | Major groove platform | geometric IL_4WF9_026 IL_48076.10 | |
| IL_9RVC_091 | 1/a/820:822, 1/a/832:836 | No text annotation | geometric IL_9E6Q_032 IL_89509.3 | |
| IL_9RVC_092 | 1/a/882:883, 1/a/984:986 | Single stack bend | homologous IL_7A0S_022 IL_15011.5 | |
| IL_9RVC_093 | 1/a/889:893, 1/a/975:978 | No text annotation | geometric IL_4WF9_029 IL_01742.1 | |
| IL_9RVC_094 | 1/a/897:898, 1/a/969:971 | Single bulged U | geometric IL_6MWN_006 IL_97561.7 | |
| IL_9RVC_095 | 1/a/901:907, 1/a/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.3 | |
| IL_9RVC_096 | 1/a/907:908, 1/a/958:960 | Minor groove platform | homologous IL_7A0S_028 IL_98469.1 | |
| IL_9RVC_097 | 1/a/909:913, 1/a/954:957 | C-loop | homologous IL_7A0S_029 IL_16301.3 | |
| IL_9RVC_099 | 1/a/920:924, 1/a/943:947 | No text annotation | ||
| IL_9RVC_100 | 1/a/925:929, 1/a/937:942 | No text annotation | ||
| IL_9RVC_101 | 1/a/1038:1040, 1/a/1203:1204 | Single bulged C | homologous IL_7A0S_032 IL_05642.5 | |
| IL_9RVC_102 | 1/a/1042:1046, 1/a/1197:1201 | UAA/GAN | homologous IL_7A0S_033 IL_08938.3 | |
| IL_9RVC_103 | 1/a/1048:1055, 1/a/1194:1195 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.2 | |
| IL_9RVC_104 | 1/a/1055:1057, 1/a/1193:1194 | Single bulged U | homologous IL_7A0S_035 IL_97561.7 | |
| IL_9RVC_105 | 1/a/1062:1068, 1/a/1184:1188 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9RVC_106 | 1/a/1068:1074, 1/a/1168:1184 | No text annotation | homologous IL_7A0S_037 IL_50715.4 | |
| IL_9RVC_107 | 1/a/1075:1078, 1/a/1165:1167 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.2 | |
| IL_9RVC_108 | 1/a/1081:1083, 1/a/1160:1162 | Isolated non-canonical cWW pair | geometric IL_9H3G_060 IL_01003.6 | |
| IL_9RVC_109 | 1/a/1087:1095, 1/a/1152:1156 | Kink-turn | geometric IL_4V9F_042 IL_99692.4 | |
| IL_9RVC_112 | 1/a/1235:1237, 1/a/1285:1288 | Isolated cWS basepair | homologous IL_7A0S_041 IL_84227.1 | |
| IL_9RVC_113 | 1/a/1243:1245, 1/a/1277:1279 | Isolated non-canonical cWW pair | homologous IL_7A0S_042 IL_01003.6 | |
| IL_9RVC_114 | 1/a/1246:1253, 1/a/1272:1276 | Kink-turn | homologous IL_7A0S_043 IL_90775.3 | |
| IL_9RVC_115 | 1/a/1257:1259, 1/a/1266:1268 | Intercalated cWW | homologous IL_7A0S_044 IL_53541.1 | |
| IL_9RVC_116 | 1/a/1300:1307, 1/a/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.5 | |
| IL_9RVC_117 | 1/a/1347:1350, 1/a/1647:1648 | No text annotation | geometric IL_9H3G_197 IL_74641.4 | |
| IL_9RVC_118 | 1/a/1356:1360, 1/a/1368:1370 | C-loop | homologous IL_7A0S_047 IL_06671.3 | |
| IL_9RVC_119 | 1/a/1388:1392, 1/a/1413:1417 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_9RVC_120 | 1/a/1394:1398, 1/a/1407:1411 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.3 | |
| IL_9RVC_121 | 1/a/1447:1460, 1/a/1628:1636 | No text annotation | ||
| IL_9RVC_122 | 1/a/1461:1465, 1/a/1624:1627 | No text annotation | geometric IL_9E6Q_057 IL_74317.1 | |
| IL_9RVC_123 | 1/a/1476:1480, 1/a/1604:1608 | No text annotation | geometric IL_4WF9_122 IL_67780.1 | |
| IL_9RVC_124 | 1/a/1481:1485, 1/a/1598:1603 | No text annotation | ||
| IL_9RVC_125 | 1/a/1511:1515, 1/a/1565:1570 | No text annotation | geometric IL_4WF9_116 IL_25186.4 | |
| IL_9RVC_126 | 1/a/1518:1522, 1/a/1558:1562 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.4 | |
| IL_9RVC_127 | 1/a/1524:1526, 1/a/1549:1556 | No text annotation | ||
| IL_9RVC_128 | 1/a/1532:1534, 1/a/1542:1543 | No text annotation | geometric IL_8B0X_121 IL_14190.4 | |
| IL_9RVC_129 | 1/a/1695:1700, 1/a/2031:2033 | No text annotation | homologous IL_7A0S_059 IL_12566.6 | |
| IL_9RVC_130 | 1/a/1707:1709, 1/a/2022:2024 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.3 | |
| IL_9RVC_131 | 1/a/1710:1713, 1/a/2020:2021 | No text annotation | geometric IL_9E6Q_063 IL_74641.4 | |
| IL_9RVC_132 | 1/a/1710:1718, 1/a/2017:2021 | No text annotation | geometric IL_8B0X_180 IL_80252.3 | |
| IL_9RVC_133 | 1/a/1713:1718, 1/a/2017:2020 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.3 | |
| IL_9RVC_134 | 1/a/1730:1735, 1/a/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.3 | |
| IL_9RVC_135 | 1/a/1757:1759, 1/a/1770:1772 | Isolated cWH basepair | geometric IL_6IA2_003 IL_10892.4 | |
| IL_9RVC_136 | 1/a/1797:1798, 1/a/2007:2009 | Single bulged A | homologous IL_7A0S_064 IL_14190.4 | |
| IL_9RVC_137 | 1/a/1825:1831, 1/a/1840:1848 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9RVC_138 | 1/a/1864:1867, 1/a/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.3 | |
| IL_9RVC_139 | 1/a/1868:1869, 1/a/1925:1928 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.2 | |
| IL_9RVC_140 | 1/a/1873:1876, 1/a/1920:1921 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.4 | |
| IL_9RVC_141 | 1/a/1878:1882, 1/a/1914:1918 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_9RVC_142 | 1/a/1883:1887, 1/a/1909:1913 | Triple sheared | homologous IL_7A0S_070 IL_15190.4 | |
| IL_9RVC_143 | 1/a/1891:1894, 1/a/1901:1905 | No text annotation | geometric IL_8B0X_136 IL_77691.7 | |
| IL_9RVC_144 | 1/a/1960:1961, 1/a/1991:1994 | No text annotation | geometric IL_8B0X_137 IL_24886.4 | |
| IL_9RVC_145 | 1/a/1961:1972, 1/a/1988:1991 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9RVC_146 | 1/a/2077:2079, 1/a/2644:2645 | Major groove platform | homologous IL_7A0S_073 IL_48076.10 | |
| IL_9RVC_147 | 1/a/2081:2083, 1/a/2639:2642 | No text annotation | geometric IL_8B0X_140 IL_80025.3 | |
| IL_9RVC_148 | 1/a/2094:2096, 1/a/2469:2470 | Single bulged U | homologous IL_7A0S_075 IL_97561.7 | |
| IL_9RVC_149 | 1/a/2097:2098, 1/a/2465:2468 | Minor groove platform | homologous IL_7A0S_076 IL_98469.1 | |
| IL_9RVC_150 | 1/a/2108:2110, 1/a/2263:2266 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.4 | |
| IL_9RVC_151 | 1/a/2122:2125, 1/a/2218:2221 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.4 | |
| IL_9RVC_157 | 1/a/2229:2231, 1/a/2247:2248 | Single bulged G | geometric IL_6TFF_002 IL_28408.4 | |
| IL_9RVC_158 | 1/a/2324:2326, 1/a/2344:2348 | Isolated tHS basepair with bulges | homologous IL_7A0S_080 IL_14250.3 | |
| IL_9RVC_159 | 1/a/2377:2380, 1/a/2391:2394 | Double sheared | homologous IL_7A0S_081 IL_58355.4 | |
| IL_9RVC_160 | 1/a/2428:2430, 1/a/2441:2442 | Single bulged U | geometric IL_4WF9_088 IL_97561.7 | |
| IL_9RVC_161 | 1/a/2480:2481, 1/a/2525:2527 | Single stack bend | homologous IL_7A0S_083 IL_15011.5 | |
| IL_9RVC_162 | 1/a/2481:2482, 1/a/2523:2525 | Major groove platform | homologous IL_7A0S_084 IL_48076.10 | |
| IL_9RVC_163 | 1/a/2484:2486, 1/a/2520:2521 | Major groove platform | homologous IL_7A0S_085 IL_48076.10 | |
| IL_9RVC_164 | 1/a/2486:2488, 1/a/2516:2520 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.4 | |
| IL_9RVC_165 | 1/a/2493:2497, 1/a/2507:2511 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.4 | |
| IL_9RVC_166 | 1/a/2534:2535, 1/a/2607:2609 | Major groove platform | homologous IL_7A0S_088 IL_46637.4 | |
| IL_9RVC_167 | 1/a/2537:2539, 1/a/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_30722.1 | |
| IL_9RVC_168 | 1/a/2539:2540, 1/a/2598:2601 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.4 | |
| IL_9RVC_169 | 1/a/2549:2550, 1/a/2567:2570 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.3 | |
| IL_9RVC_170 | 1/a/2618:2619, 1/a/2628:2630 | No text annotation | geometric IL_8B0X_159 IL_14190.4 | |
| IL_9RVC_171 | 1/a/2659:2662, 1/a/2810:2813 | No text annotation | geometric IL_8BH9_001 IL_39691.1 | |
| IL_9RVC_172 | 1/a/2663:2667, 1/a/2801:2809 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9RVC_173 | 1/a/2679:2685, 1/a/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9RVC_174 | 1/a/2707:2711, 1/a/2752:2754 | C-loop | homologous IL_7A0S_095 IL_63596.14 | |
| IL_9RVC_175 | 1/a/2714:2718, 1/a/2745:2749 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9RVC_176 | 1/a/2722:2723, 1/a/2738:2741 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.4 | |
| IL_9RVC_177 | 1/a/2764:2769, 1/a/2789:2794 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9RVC_179 | 1/a/2858:2859, 1/a/2898:2900 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.4 | |
| IL_9RVC_180 | 1/a/2863:2865, 1/a/2891:2894 | Decoding loop related | homologous IL_7A0S_100 IL_05502.2 | |
| IL_9RVC_181 | 1/a/2867:2872, 1/a/2885:2889 | No text annotation | homologous IL_7A0S_101 IL_48489.3 | |
| IL_9RVC_182 | 1/b/3:5, 1/b/110:112 | Isolated cWH basepair | geometric IL_9PN5_188 IL_10892.4 | |
| IL_9RVC_183 | 1/b/5:8, 1/b/107:110 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_39691.1 | |
| IL_9RVC_184 | 1/b/15:16, 1/b/63:65 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.4 | |
| IL_9RVC_185 | 1/b/20:27, 1/b/53:59 | No text annotation | geometric IL_4WF9_113 IL_01750.1 | |
| IL_9RVC_186 | 1/b/28:29, 1/b/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.4 | |
| IL_9RVC_187 | 1/b/32:36, 1/b/42:46 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.14 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9RVC_010 | No text annotation | ||
| IL_9RVC_011 | Tandem non-canonical cWW pairs | ||
| IL_9RVC_026 | Major groove platform | ||
| IL_9RVC_028 | No text annotation | ||
| IL_9RVC_041 | Isolated cWH basepair | ||
| IL_9RVC_066 | No text annotation | ||
| IL_9RVC_076 | Isolated cWH basepair | ||
| IL_9RVC_098 | Isolated non-canonical cWW pair | ||
| IL_9RVC_110 | No text annotation | ||
| IL_9RVC_111 | No text annotation | ||
| IL_9RVC_152 | No text annotation | ||
| IL_9RVC_153 | No text annotation | ||
| IL_9RVC_154 | No text annotation | ||
| IL_9RVC_155 | No text annotation | ||
| IL_9RVC_156 | No text annotation | ||
| IL_9RVC_178 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9RVC_001 | 1/A/47:48, 1/A/369:375, 1/A/401:403 | No text annotation | geometric J3_8B0X_001 J3_58657.3 | |
| J3_9RVC_002 | 1/A/47:53, 1/A/367:375, 1/A/401:403 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_9RVC_003 | 1/A/594:596, 1/A/659:662, 1/A/762:763 | No text annotation | geometric J3_8B0X_002 J3_01633.3 | |
| J3_9RVC_004 | 1/A/594:596, 1/A/659:664, 1/A/758:763 | No text annotation | ||
| J3_9RVC_005 | 1/A/680:681, 1/A/725:733, 1/A/740:742 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9RVC_006 | 1/A/834:837, 1/A/867:871, 1/A/878:884 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_9RVC_007 | 1/A/946:949, 1/A/1355:1361, 1/A/1383:1390 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_9RVC_008 | 1/A/953:956, 1/A/1246:1248, 1/A/1348:1351 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_9RVC_009 | 1/A/965:972, 1/A/983:994, 1/A/1232:1236 | No text annotation | geometric J3_8B0X_007 J3_88451.3 | |
| J3_9RVC_010 | 1/A/1000:1003, 1/A/1057:1059, 1/A/1221:1226 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_9RVC_011 | 1/A/1003:1018, 1/A/1031:1037, 1/A/1047:1057 | No text annotation | ||
| J3_9RVC_012 | 1/A/1075:1080, 1/A/1119:1125, 1/A/1198:1204 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_9RVC_013 | 1/A/1085:1086, 1/A/1095:1098, 1/A/1111:1114 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_9RVC_014 | 1/A/1128:1130, 1/A/1166:1169, 1/A/1192:1195 | No text annotation | geometric J3_8B0X_012 J3_82365.7 | |
| J3_9RVC_015 | 1/A/1128:1130, 1/A/1166:1172, 1/A/1186:1195 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_9RVC_016 | 1/A/1248:1252, 1/A/1307:1314, 1/A/1345:1348 | No text annotation | homologous J3_6CZR_026 NA | |
| J3_9RVC_017 | 1/a/30:31, 1/a/520:527, 1/a/554:555 | No text annotation | geometric J3_8GLP_025 J3_68715.3 | |
| J3_9RVC_018 | 1/a/30:31, 1/a/520:530, 1/a/541:555 | No text annotation | homologous J3_7A0S_015 J3_17917.3 | |
| J3_9RVC_019 | 1/a/32:35, 1/a/491:507, 1/a/514:519 | No text annotation | homologous J3_7A0S_016 J3_07616.3 | |
| J3_9RVC_020 | 1/a/56:67, 1/a/74:76, 1/a/109:113 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_9RVC_021 | 1/a/272:276, 1/a/295:302, 1/a/415:416 | No text annotation | homologous J3_7A0S_003 J3_97971.2 | |
| J3_9RVC_022 | 1/a/340:344, 1/a/359:368, 1/a/380:384 | No text annotation | geometric J3_9DFE_006 J3_77124.1 | |
| J3_9RVC_023 | 1/a/728:734, 1/a/818:820, 1/a/836:839 | No text annotation | homologous J3_7A0S_004 J3_46658.3 | |
| J3_9RVC_024 | 1/a/743:745, 1/a/777:781, 1/a/805:808 | No text annotation | homologous J3_7A0S_005 J3_69816.3 | |
| J3_9RVC_025 | 1/a/1335:1340, 1/a/1669:1671, 1/a/1683:1686 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9RVC_026 | 1/a/1342:1346, 1/a/1649:1655, 1/a/1664:1667 | No text annotation | geometric J3_4WF9_005 J3_68164.1 | |
| J3_9RVC_027 | 1/a/1381:1387, 1/a/1418:1422, 1/a/1439:1440 | No text annotation | homologous J3_7A0S_018 J3_94309.3 | |
| J3_9RVC_028 | 1/a/1468:1473, 1/a/1611:1612, 1/a/1615:1621 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9RVC_029 | 1/a/2118:2120, 1/a/2223:2228, 1/a/2249:2255 | No text annotation | geometric J3_4WF9_007 J3_07703.1 | |
| J3_9RVC_030 | 1/a/2309:2311, 1/a/2411:2422, 1/a/2448:2454 | No text annotation | homologous J3_7A0S_020 J3_04772.3 | |
| J3_9RVC_031 | 1/a/2322:2324, 1/a/2348:2350, 1/a/2359:2364 | No text annotation | homologous J3_7A0S_010 J3_05327.3 | |
| J3_9RVC_032 | 1/a/2544:2547, 1/a/2572:2574, 1/a/2588:2594 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9RVC_033 | 1/a/2816:2817, 1/a/2826:2831, 1/a/2909:2913 | No text annotation | geometric J3_9DFE_018 J3_24127.1 | |
| J3_9RVC_034 | 1/a/2834:2835, 1/a/2851:2856, 1/a/2902:2906 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_9RVC_035 | 1/b/8:14, 1/b/66:79, 1/b/92:107 | No text annotation | ||
| J4_9RVC_001 | 1/A/114:122, 1/A/246:248, 1/A/294:297, 1/A/319:320 | No text annotation | ||
| J4_9RVC_002 | 1/A/142:144, 1/A/178:185, 1/A/206:215, 1/A/225:229 | No text annotation | ||
| J4_9RVC_003 | 1/A/583:585, 1/A/772:777, 1/A/818:829, 1/A/889:890 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_9RVC_004 | 1/Y/7:10, 1/Y/25:27, 1/Y/43:49, 1/Y/65:66 | tRNA junction | homologous J4_6UFM_001 J4_95067.2 | |
| J4_9RVC_005 | 1/Z/7:10, 1/Z/25:27, 1/Z/43:49, 1/Z/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_95067.2 | |
| J4_9RVC_006 | 1/a/271:272, 1/a/416:421, 1/a/445:452, 1/a/467:470 | No text annotation | homologous J4_7A0S_001 J4_94698.3 | |
| J4_9RVC_007 | 1/a/340:344, 1/a/359:362, 1/a/366:368, 1/a/380:384 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9RVC_008 | 1/a/644:647, 1/a/669:673, 1/a/680:684, 1/a/694:701 | No text annotation | ||
| J4_9RVC_009 | 1/a/1308:1313, 1/a/1331:1332, 1/a/1689:1692, 1/a/2036:2037 | No text annotation | homologous J4_7A0S_004 J4_19484.1 | |
| J4_9RVC_010 | 1/a/1347:1351, 1/a/1375:1380, 1/a/1441:1442, 1/a/1641:1648 | No text annotation | ||
| J4_9RVC_011 | 1/a/1350:1351, 1/a/1375:1380, 1/a/1441:1442, 1/a/1641:1647 | No text annotation | homologous J4_7A0S_006 J4_48150.2 | |
| J4_9RVC_012 | 1/a/1485:1490, 1/a/1508:1510, 1/a/1571:1572, 1/a/1594:1598 | No text annotation | ||
| J4_9RVC_013 | 1/a/1799:1803, 1/a/1815:1819, 1/a/1854:1857, 1/a/2002:2006 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9RVC_014 | 1/a/1860:1862, 1/a/1932:1933, 1/a/1951:1960, 1/a/1994:1999 | No text annotation | ||
| J4_9RVC_015 | 1/a/2312:2316, 1/a/2370:2374, 1/a/2397:2399, 1/a/2408:2410 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9RVC_016 | 1/a/2670:2673, 1/a/2701:2703, 1/a/2758:2762, 1/a/2796:2798 | No text annotation | ||
| J5_9RVC_001 | 1/A/37:40, 1/A/411:414, 1/A/444:450, 1/A/500:509, 1/A/552:556 | No text annotation | ||
| J5_9RVC_002 | 1/A/59:62, 1/A/105:112, 1/A/322:324, 1/A/345:347, 1/A/358:362 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_9RVC_003 | 1/a/47:54, 1/a/115:120, 1/a/129:130, 1/a/149:151, 1/a/178:180 | No text annotation | ||
| J5_9RVC_004 | 1/a/271:276, 1/a/295:302, 1/a/415:421, 1/a/445:452, 1/a/467:470 | No text annotation | ||
| J5_9RVC_005 | 1/a/576:578, 1/a/603:607, 1/a/620:622, 1/a/1299:1300, 1/a/2044:2045 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9RVC_006 | 1/a/627:632, 1/a/713:716, 1/a/854:857, 1/a/1234:1235, 1/a/1288:1294 | No text annotation | ||
| J5_9RVC_007 | 1/a/1718:1726, 1/a/1750:1751, 1/a/1778:1779, 1/a/1783:1791, 1/a/2015:2017 | No text annotation | homologous J5_7A0S_005 J5_99177.3 | |
| J5_9RVC_008 | 1/a/2084:2091, 1/a/2473:2480, 1/a/2527:2533, 1/a/2610:2615, 1/a/2633:2638 | No text annotation | ||
| J5_9RVC_009 | 1/a/2101:2104, 1/a/2270:2273, 1/a/2285:2286, 1/a/2308:2309, 1/a/2454:2462 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9RVC_001 | 1/a/45:46, 1/a/181:186, 1/a/217:227, 1/a/234:238, 1/a/265:269, 1/a/472:479 | No text annotation | ||
| J6_9RVC_002 | 1/a/2101:2104, 1/a/2270:2273, 1/a/2285:2286, 1/a/2308:2311, 1/a/2411:2422, 1/a/2448:2462 | No text annotation | ||
| J7_9RVC_001 | 1/a/8:15, 1/a/570:576, 1/a/2045:2050, 1/a/2067:2070, 1/a/2652:2657, 1/a/2815:2816, 1/a/2913:2914 | No text annotation | ||
| J7_9RVC_002 | 1/a/862:867, 1/a/880:881, 1/a/987:990, 1/a/1015:1020, 1/a/1031:1035, 1/a/1207:1208, 1/a/1224:1229 | No text annotation |
Problematic loops
No problematic loops
Coloring options: