HL_9RVC_027

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

9RVC|1|A|C|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_027 not in the Motif Atlas

Homologous match to HL_6CZR_098

Geometric discrepancy: 0.4226

The information below is about HL_6CZR_098

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9RVC|1|A|U|1176
9RVC|1|A|G|1177
9RVC|1|A|A|1178
9RVC|1|A|C|1179
9RVC|1|A|A|1180
9RVC|1|A|A|1181
9RVC|1|A|A|1182

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2