HL_9RVC_033
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGUUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9RVC|1|Y|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RVC_033 not in the Motif Atlas
- Homologous match to HL_4YCO_001
- Geometric discrepancy: 0.2646
- The information below is about HL_4YCO_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23048.1
- Basepair signature
- cWW-cWS-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9RVC|1|Y|C|13
9RVC|1|Y|A|14
9RVC|1|Y|G|15
9RVC|1|Y|U|16
9RVC|1|Y|U|17
9RVC|1|Y|G|18
9RVC|1|Y|G|19
9RVC|1|Y|U|20
9RVC|1|Y|A|21
9RVC|1|Y|G|22
Current chains
- Chain Y
- A-site tRNA-Lys
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: