HL_9RVC_054

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_054 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.1082

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9RVC|1|a|C|533
9RVC|1|a|G|534
9RVC|1|a|G|535
9RVC|1|a|A|536
9RVC|1|a|A|537
9RVC|1|a|G|538

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22